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dump.go
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dump.go
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// Copyright 2020 The npyio Authors. All rights reserved.
// Use of this source code is governed by a BSD-style
// license that can be found in the LICENSE file.
package npyio
import (
"bytes"
"fmt"
"io"
"os"
"reflect"
"strings"
"github.com/sbinet/npyio/npy"
"github.com/sbinet/npyio/npz"
)
// Dump dumps the content of the provided reader to the writer,
// in a human readable format
func Dump(o io.Writer, r io.ReaderAt) error {
var (
err error
zipMagic = [4]byte{'P', 'K', 3, 4}
fname = "input.npy"
)
if r, ok := r.(interface{ Name() string }); ok {
fname = r.Name()
}
fmt.Fprintf(o, strings.Repeat("=", 80)+"\n")
fmt.Fprintf(o, "file: %v\n", fname)
// detect .npz files (check if we find a ZIP file magic header)
var hdr [6]byte
_, err = r.ReadAt(hdr[:], 0)
if err != nil {
return fmt.Errorf("npyio: could not infer format: %w", err)
}
sizeof := func(r io.ReaderAt) (int64, error) {
switch r := r.(type) {
case interface{ Stat() (os.FileInfo, error) }:
fi, err := r.Stat()
if err != nil {
return 0, err
}
return fi.Size(), nil
case io.Seeker:
pos, err := r.Seek(0, io.SeekCurrent)
if err != nil {
return 0, err
}
sz, err := r.Seek(0, io.SeekEnd)
if err != nil {
return 0, err
}
_, err = r.Seek(pos, io.SeekStart)
if err != nil {
return 0, err
}
return sz, nil
default:
return 0, fmt.Errorf("npyio: unsupported reader: %T", r)
}
}
sz, err := sizeof(r)
if err != nil {
return fmt.Errorf("npyio: could not infer file size: %w", err)
}
switch {
case bytes.Equal(npy.Magic[:], hdr[:]):
err = display(o, io.NewSectionReader(r, 0, sz), fname)
if err != nil {
return fmt.Errorf("npyio: could not display ile: %w", err)
}
case bytes.Equal(zipMagic[:], hdr[:len(zipMagic)]):
zr, err := npz.NewReader(r, sz)
if err != nil {
return fmt.Errorf("npyio: could not create npz reader: %w", err)
}
defer zr.Close()
for i, name := range zr.Keys() {
r, err := zr.Open(name)
if err != nil {
return fmt.Errorf(
"npyio: could not open npz entry %s: %w",
name, err,
)
}
defer r.Close()
if i > 0 {
fmt.Fprintf(o, "\n")
}
fmt.Fprintf(o, "entry: %s\n", name)
err = display(o, r, fname+"@"+name)
if err != nil {
return fmt.Errorf(
"npyio: could not display npz entry %s: %w",
name, err,
)
}
err = r.Close()
if err != nil {
return fmt.Errorf(
"npyio: could not close npz entry %s: %w",
name, err,
)
}
}
default:
return fmt.Errorf("npyio: unknown magic header %q", string(hdr[:]))
}
return nil
}
func display(o io.Writer, f io.Reader, fname string) error {
r, err := npy.NewReader(f)
if err != nil {
return fmt.Errorf("npyio: could not create npy reader %s: %w", fname, err)
}
fmt.Fprintf(o, "npy-header: %v\n", r.Header)
rt := npy.TypeFrom(r.Header.Descr.Type)
if rt == nil {
return fmt.Errorf("npyio: no reflect type for %q", r.Header.Descr.Type)
}
rv := reflect.New(reflect.SliceOf(rt))
err = r.Read(rv.Interface())
if err != nil && err != io.EOF {
return fmt.Errorf("npyio: read error: %w", err)
}
fmt.Fprintf(o, "data = %v\n", rv.Elem().Interface())
return nil
}