Infant Outcomes: data extraction

[dlemas]

Please extract the data within the "Infant Obesity Outcomes" report that is stored within Redcap. Note: you will need to first populate the report with RedCap variables relevant to infant outcomes.

Script: get_reportData_36954.Rmd

This script requires:

• access to BEACH study RedCap project via API token
• R/rstudio configuration using the keyringr package
• UF VPN access

This script will output:

• data as an *.Rdata object locally within the directory ~/data/processed/

[michele-himadi]

@dlemas - after looking over the report, I have included the following infant outcomes variables from the Infant Obesity Outcomes (36954) report.

• Infant Obesity Outcomes (report)/ beach_final_bmi (BMI variable)
• Infant Obesity Outcomes (report)/ mom3t_crc_wt_kg (Mother's weight variable prenatal)
• Infant Obesity Outcomes (report)/ compostnat_crc_wt_kg (Mother's weight variable postnatal)
• Infant Obesity Outcomes (report)/ mom3t_meds_name (medication variable, if any)
• Infant Obesity Outcomes (report)/ mom3t_when_sick_14d (sick variable, if any)
• Infant Obesity Outcomes (report)/ mom3t_diabetes (diabetes variable)
• Infant Obesity Outcomes (report)/ mom3t_bio_child (biological children variable)
• Infant Obesity Outcomes (report)/ mom3t_preg_previous (previous pregnancies variable)
• Infant Obesity Outcomes (report)/ mom3t_low_birth_wt (low birth weight in previous children variable)
• Infant Obesity Outcomes (report)/ mom3t_preterm (preterm delivery in previous pregnancies variable)
• Infant Obesity Outcomes (report)/ infant_age_days (infant age variable)
• Infant Obesity Outcomes (report)/ infant_crc_ht_cm (infant height variable)
• Infant Obesity Outcomes (report)/ infant_crc_wt_kg (infant weight variable)
• Infant Obesity Outcomes (report)/ wt_zscore (infant zscore variable)
• Infant Obesity Outcomes (report)/ infant_crc_headcircum_cm (head circumference variable)

Should we add variables from other reports?