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filter() to encounter for each ICD9/10 code #27

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dlemas opened this issue Jan 10, 2022 · 1 comment
Open

filter() to encounter for each ICD9/10 code #27

dlemas opened this issue Jan 10, 2022 · 1 comment
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@xkcococo
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enhancement New feature or request
Projects
PE Prediction
Milestone
Data Processing i...

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@dlemas
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dlemas commented Jan 10, 2022

The script to modify is : idr2rda_mom_diagnosis.rmd

something like . . .
ehr_codes=df %>%
group_by(ID, ICD-code) %>%
filter(perinatal_dx_type=="ENCOUNTER")

This will REDUCE the size of the *RDA output file that is used for downstream analysis.
@dlemas dlemas added the enhancement New feature or request label Jan 10, 2022
@dlemas dlemas added this to the Data Processing is Complete milestone Jan 10, 2022
@dlemas
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dlemas commented Jan 10, 2022

https://github.com/lemaslab/ehr-preeclampsia-model/blob/main/code/00_get_data/idr2rda_mom_diagnosis.rmd

xkcococo pushed a commit that referenced this issue Jan 14, 2022
Issue #27
fce54cb 
Filter perinatal dx type == 'ENCOUNTER' for each ICD-codes per participant ID
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@xkcococo xkcococo

Labels
enhancement New feature or request
Projects
PE Prediction
Awaiting triage
Milestone
Data Processing is Complete
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@dlemas @xkcococo