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Add Manhattan Plot to Statistical Analysis #24

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XinsongDu opened this issue Mar 30, 2020 · 0 comments
Open

Add Manhattan Plot to Statistical Analysis #24

XinsongDu opened this issue Mar 30, 2020 · 0 comments
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enhancement New feature or request level_1 difficulty level of resolving this issue is 1 (need to add new code)

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@XinsongDu
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XinsongDu commented Mar 30, 2020

Add Manhattan Plot (example plot can be found in this paper: https://www.sciencedirect.com/science/article/abs/pii/S0022347616000287?via%3Dihub) to the pipeline. Sample data can be used to test your code. Steps:

  • Google the term and learn about what Manhattan plot is.
  • Write code to create Manhattan plot for Sample data.
  • Analyze input and output of your code, add argument parser for Python or argument parser for R.
  • Check code qualify using pylint (if using Python) or lintr (if using R) and improve code quality based on checking results.
  • Modify main.nf to integrate your new code to RUMP and test your code.
  • Make a pull request and wait for review.

Figure 4B of this paper might be a good reference.

@XinsongDu XinsongDu added the enhancement New feature or request label Mar 30, 2020
@XinsongDu XinsongDu changed the title Manhattan Plot Add Manhattan Plot to Statistical Analysis Mar 30, 2020
@XinsongDu XinsongDu added level_1 difficulty level of resolving this issue is 1 (need to add new code) level_0 difficulty level of resolving this issue is 0 (documentation related only) and removed level_0 difficulty level of resolving this issue is 0 (documentation related only) labels Jun 1, 2020
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Labels
enhancement New feature or request level_1 difficulty level of resolving this issue is 1 (need to add new code)
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