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Add Support Vector Machine (SVM) to Statistical Analysis #26

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XinsongDu opened this issue Mar 30, 2020 · 0 comments
Open

Add Support Vector Machine (SVM) to Statistical Analysis #26

XinsongDu opened this issue Mar 30, 2020 · 0 comments
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enhancement New feature or request level_1 difficulty level of resolving this issue is 1 (need to add new code)

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@XinsongDu
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XinsongDu commented Mar 30, 2020

Check how MetaboAnalyst (https://www.metaboanalyst.ca/) do SVM for metabolomics data, add similar function to RUMP. Sample data can be used to test your code. Steps:

  • Google the term and learn about what SVM is.
  • Write code to create SVM for Sample data.
  • Analyze input and output of your code, add argument parser for Python or argument parser for R.
  • Check code qualify using pylint (if using Python) or lintr (if using R) and improve code quality based on checking results.
  • Modify main.nf to integrate your new code to RUMP and test your code.
  • Make a pull request and wait for review.

Using MetaboAnalyst and their sample data to do SVM and observe what the results look like might be helpful.

@XinsongDu XinsongDu assigned XinsongDu and unassigned XinsongDu Mar 30, 2020
@XinsongDu XinsongDu added the enhancement New feature or request label Mar 30, 2020
@XinsongDu XinsongDu changed the title Adding Support Vector Machine (SVM) Add Support Vector Machine (SVM) to Statistical Analysis Mar 30, 2020
@XinsongDu XinsongDu added the level_1 difficulty level of resolving this issue is 1 (need to add new code) label Jun 1, 2020
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enhancement New feature or request level_1 difficulty level of resolving this issue is 1 (need to add new code)
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