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Metadata.tab file for multiome datasets (snRNA+ATAC-Seq) #159

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alevax opened this issue Sep 24, 2021 · 1 comment
Open

Metadata.tab file for multiome datasets (snRNA+ATAC-Seq) #159

alevax opened this issue Sep 24, 2021 · 1 comment

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@alevax
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alevax commented Sep 24, 2021

Hi,

for datasets out of the snRNA-Seq+ATAC-Seq (multiome data) is still fine to use these parameters for the metadata.tab file:

name technology targetnumcells
XX013 10xv3 10000

or should the technology field be updated with something else?

I see that from 8K cells, only about 1,5K are in output (where the same sample sequenced on normal 10x chemistry v3 I get about 5K cells from 8,5K that I start with.

Thanks,
Alessandro.

@Lei-Guo
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Lei-Guo commented Jan 25, 2023

Having the same issue. It's been 2 years and still no answer for this question.

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