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fish_queue_processor.out
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NOTE: You have to manually do 'conda activate test_d_seg' before starting this script.
NOTE: Reading extra papermill parameters from fish_papermill_xparams.yaml
Remove fish_queue_rm_me_to_gently_shutdown.txt file to make the processor quit when current sample is finished.
Tue Jan 24 15:27:12 CET 2023 INFO: Processing of /fish/current_folder/JJEXP20220320_EEL_SL010A_S1 starting. Dashboard port: 25399
Tue Jan 24 15:27:13 CET 2023 INFO: Command is papermill -k test_d_seg notebooks/Template_reprocess_pysmFISH_pipeline.ipynb /fish/current_folder/JJEXP20220320_EEL_SL010A_S1/notebooks/230124-full-run.ipynb -p experiment_fpath /fish/current_folder/JJEXP20220320_EEL_SL010A_S1 -p run_type new -p parsing_type no_parsing -p scheduler_port 36390 --start_timeout 6000 -p dashboard_port 25399 -f fish_papermill_xparams.yaml --log-output --stdout-file /fish/current_folder/JJEXP20220320_EEL_SL010A_S1/logs/230124_papermill.stdout --stderr-file /fish/current_folder/JJEXP20220320_EEL_SL010A_S1/logs/230124_papermill.stderr
/home/simone/mini/envs/test_d_seg/lib/python3.8/site-packages/papermill/iorw.py:50: FutureWarning: pyarrow.HadoopFileSystem is deprecated as of 2.0.0, please use pyarrow.fs.HadoopFileSystem instead.
from pyarrow import HadoopFileSystem
Input Notebook: notebooks/Template_reprocess_pysmFISH_pipeline.ipynb
Output Notebook: /fish/current_folder/JJEXP20220320_EEL_SL010A_S1/notebooks/230124-full-run.ipynb
Generating grammar tables from /home/simone/mini/envs/test_d_seg/lib/python3.8/site-packages/blib2to3/Grammar.txt
Writing grammar tables to /home/simone/.cache/black/21.7b0/Grammar3.8.5.final.0.pickle
Writing failed: [Errno 2] No such file or directory: '/home/simone/.cache/black/21.7b0/tmp4khkt3s_'
Generating grammar tables from /home/simone/mini/envs/test_d_seg/lib/python3.8/site-packages/blib2to3/PatternGrammar.txt
Writing grammar tables to /home/simone/.cache/black/21.7b0/PatternGrammar3.8.5.final.0.pickle
Writing failed: [Errno 2] No such file or directory: '/home/simone/.cache/black/21.7b0/tmpn37bwyhi'
Kernel Provisioning: The 'local-provisioner' is not found. This is likely due to the presence of multiple jupyter_client distributions and a previous distribution is being used as the source for entrypoints - which does not include 'local-provisioner'. That distribution should be removed such that only the version-appropriate distribution remains (version >= 7). Until then, a 'local-provisioner' entrypoint will be automatically constructed and used.
The candidate distribution locations are: ['/home/simone/mini/envs/test_d_seg/lib/python3.8/site-packages/jupyter_client-6.1.11.dist-info', '/home/simone/mini/envs/test_d_seg/lib/python3.8/site-packages/jupyter_client-7.0.5.dist-info']
Executing notebook with kernel: test_d_seg
Executing Cell 1---------------------------------------
Ending Cell 1------------------------------------------
Executing Cell 2---------------------------------------
/home/simone/mini/envs/test_d_seg/lib/python3.8/site-packages/dask_jobqueue/core.py:19: FutureWarning: format_bytes is deprecated and will be removed in a future release. Please use dask.utils.format_bytes instead.
from distributed.utils import format_bytes, parse_bytes, tmpfile
/home/simone/mini/envs/test_d_seg/lib/python3.8/site-packages/dask_jobqueue/core.py:19: FutureWarning: parse_bytes is deprecated and will be removed in a future release. Please use dask.utils.parse_bytes instead.
from distributed.utils import format_bytes, parse_bytes, tmpfile
/home/simone/mini/envs/test_d_seg/lib/python3.8/site-packages/dask_jobqueue/htcondor.py:6: FutureWarning: parse_bytes is deprecated and will be removed in a future release. Please use dask.utils.parse_bytes instead.
from distributed.utils import parse_bytes
version cpu
Ending Cell 2------------------------------------------
Executing Cell 3---------------------------------------
Ending Cell 3------------------------------------------
Executing Cell 4---------------------------------------
Ending Cell 4------------------------------------------
Executing Cell 5---------------------------------------
Ending Cell 5------------------------------------------
Executing Cell 6---------------------------------------
no notes
Ending Cell 6------------------------------------------
Executing Cell 7---------------------------------------
Ending Cell 7------------------------------------------
Executing Cell 8---------------------------------------
distributed.worker - INFO - raw_data already exist
distributed.worker - INFO - original_robofish_logs already exist
distributed.worker - INFO - extra_processing_data already exist
distributed.worker - INFO - extra_files already exist
distributed.worker - INFO - pipeline_config already exist
distributed.worker - INFO - output_figures already exist
distributed.worker - INFO - probes already exist
distributed.worker - INFO - logs already exist
distributed.worker - INFO - results already exist
distributed.worker - INFO - microscope_tiles_coords already exist
distributed.worker - INFO - notebooks already exist
distributed.deploy.ssh - INFO - distributed.scheduler - INFO - -----------------------------------------------
distributed.deploy.ssh - INFO - distributed.scheduler - INFO - -----------------------------------------------
distributed.deploy.ssh - INFO - distributed.scheduler - INFO - Clear task state
distributed.deploy.ssh - INFO - distributed.scheduler - INFO - Scheduler at: tcp://193.10.16.58:36390
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:45581'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:44369'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:37655'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:44645'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:43351'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:43411'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:38045'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:44461'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:44253'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:39891'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:38637'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:35887'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:38997'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:33373'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:40649'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:38067'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:42605'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:43429'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:34539'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:32827'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:45765'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:33463'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:38999'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:44035'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:42267'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:44539'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:44825'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:43585'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:45767'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:43035'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:41531'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:39635'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:38481'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:41435'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:46133'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:44947'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:45523'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:41445'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:41413'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:35167'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:44031'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:39715'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:44169'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:39129'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:35437'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:42859'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:34427'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:39339'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:39511'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:46015'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:44229'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:37463'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:32999'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:40375'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:34799'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:36669'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:33257'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:43967'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:44035'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:44165'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:35159'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:46313'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:39907'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:41919'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:35751'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:42377'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:36887'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:37043'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:34305'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:37947'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:34329'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:44783'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:42999'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:42861'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:39699'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:44665'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:32837'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:44779'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:37701'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:43599'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:46575'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:36197'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:45101'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:38613'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:36899'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:38739'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:45645'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:35617'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:40143'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:36961'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:37357'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:36933'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:42411'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:36571'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:33585'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:38063'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:38471'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:42603'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:45909'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:34859'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:45859'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:40463'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:40597'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:39897'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:33903'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:39667'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:34759'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:38985'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:37037'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:39307'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:42179'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:46573'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:40379'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:45749'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:45617'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:35019'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:37731'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:39247'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:35845'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:39985'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:43297'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:33513'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:33141'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:42683'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:44583'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:46571'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:37525'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:43211'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:33655'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:44083'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:44667'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:45389'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:45861'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:34339'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:34317'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:39327'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:38793'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:38045'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:34223'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:43129'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:46597'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:45473'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:34707'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:38131'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:46407'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:44773'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:45923'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:45147'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:45081'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:41497'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:37049'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:46313'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:34583'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:41141'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:34305'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:35219'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:37835'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:41681'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:40037'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:44823'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:35233'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:34167'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:45343'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:46315'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:34549'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:34645'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:35205'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:46319'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:34403'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:43717'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:33927'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:34145'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:41209'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:36487'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:45969'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:38137'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:39955'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:44537'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:45799'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:37359'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:42847'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:34289'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:41479'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:46319'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:37051'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:45151'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:39599'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:36169'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:37581'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:46611'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:43709'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:35691'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:36897'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:43425'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:34961'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:37247'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:45371'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:45431'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:33901'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:45363'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:37221'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:46607'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:43455'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:41655'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:39149'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:34949'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:36567'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:37651'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:44113'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:34049'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:36713'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:42519'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:46821'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:44349'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:36891'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:42329'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:33415'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:35887'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:37485'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:41251'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:46413'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:46325'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:39507'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:35673'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:42987'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:37557'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:46115'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:33977'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:46167'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:42093'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:46025'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:40031'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:40923'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:46569'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:43719'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:34963'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:41203'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:41539'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:34251'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:42485'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:38043'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:34491'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:33537'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:39881'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:40873'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:44757'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:43781'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:34477'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:33893'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:34255'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:36719'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:44249'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:35971'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:44167'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:36175'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:38847'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:37653'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:44215'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:45977'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:38433'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:46399'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:37033'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:38237'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:44597'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:41017'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.33:32983'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:40973'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:35249'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:42901'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:41203'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:34147'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:35261'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:40955'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:43149'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:40641'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:44733'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:34157'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:44497'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:34959'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:41171'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:43943'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:37769'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:34513'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:35553'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:42805'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:32789'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:33823'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:43795'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:46205'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:43933'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:34347'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:34377'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:33257'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:36739'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:43339'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:45403'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:43947'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:40505'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:43759'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:34673'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:45937'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.12:35611'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:33091'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:37477'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:46627'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:39961'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:44243'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:35101'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:34143'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:37705'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:33733'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:45737'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:40441'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:43607'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:41391'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:36851'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:46139'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.11:45415'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:40347'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:45931'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:44497'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:42875'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:39573'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:45891'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:40049'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:40083'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:39901'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:45039'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:41079'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:44949'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:39397'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:46117'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:33255'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:43503'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:46529'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:41135'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:37183'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:43905'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:40705'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:36241'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:39859'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:35937'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:35503'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:35191'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:44297'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:35445'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:39215'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:33403'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:38645'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:41153'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:40701'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:40051'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:43833'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:39071'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:38813'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:33589'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:46357'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:41605'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:36327'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:35857'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:43479'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:45319'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:33667'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:34303'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:40369'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:40597'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:35493'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:36745'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:42231'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:43923'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:37161'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:36545'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:44559'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:37677'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:45799'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:41873'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:40063'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:44111'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:41185'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:40227'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:35841'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:40605'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:41257'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:36493'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:43355'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:44607'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:41431'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:34317'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:46215'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:44801'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:42011'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:40741'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:39091'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:40977'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:42605'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:35171'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:41957'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:39211'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:43083'
distributed.deploy.ssh - INFO - distributed.nanny - INFO - Start Nanny at: 'tcp://192.168.0.10:37355'
distributed.deploy.ssh - INFO - distributed.worker - INFO - Start worker at: tcp://192.168.0.33:35513
distributed.deploy.ssh - INFO - distributed.worker - INFO - Start worker at: tcp://192.168.0.12:33237
distributed.deploy.ssh - INFO - distributed.worker - INFO - Start worker at: tcp://192.168.0.11:42543
distributed.deploy.ssh - INFO - distributed.worker - INFO - Start worker at: tcp://192.168.0.10:37249
distributed.worker - INFO - cluster properties: htcondor_cluster_setup {'processing_engine': 'unmanaged_cluster', 'cores': 20, 'memory': '6GB', 'disk': '0.1GB', 'local_directory': '/tmp', 'logs_directory': '/fish/current_folder/JJEXP20220320_EEL_SL010A_S1/logs', 'adaptive': True, 'maximum_jobs': 15, 'scheduler_port': 36390, 'dashboard_port': 25399, 'scheduler_address': 'localhost', 'workers_addresses_list': ['monod10', 'monod11', 'monod12', 'monod33'], 'nprocs': 100, 'nthreads': 1}
distributed.worker - INFO - Started unmanaged cluster
distributed.worker - INFO - selected functions for eel-human-GBM
distributed.worker - INFO - loaded ROBOFISH2_dark_img dark image
Ending Cell 8------------------------------------------
Executing Cell 9---------------------------------------
Bead alignment cleaning version
performing cleaning
performing cleaning
Bead Alignment: Performing optimization of: scale
Bead Alignment: Performing optimization of: angle
Bead Alignment: Performing optimization of: angle
Bead Alignment: Performing optimization of: scale
Bead Alignment: Performing optimization of: angle
Bead Alignment: Performing optimization of: scale
Expanding segmentation: 0, 0, 5000
Expanding segmentation: 1, 5000, 10000
Expanding segmentation: 2, 10000, 15000
Expanding segmentation: 3, 15000, 20000
Expanding segmentation: 4, 20000, 25000
Expanding segmentation: 5, 25000, 30000
Calculating unique genes
Analysis complete
Ending Cell 9------------------------------------------
Executing Cell 10--------------------------------------
'#Reprocessing\nrunning_pipeline.run_setup()\nrunning_pipeline.run_cluster_activation()\nrunning_pipeline.run_parsing()\nrunning_pipeline.run_required_steps()\n\n#fovs_to_process = [244,189]\n#testing_dataset = running_pipeline.data.dataset.loc[running_pipeline.data.dataset.fov_num.isin(fovs_to_process),:]\n#running_pipeline.grpd_fovs = testing_dataset.groupby(\'fov_num\')\n\nalready_processed = (Path(running_pipeline.experiment_fpath) / "results").glob(\n "*barcodes_max_array*.parquet"\n )\nalready_done_fovs = []\n\nfor fname in already_processed:\n fov_num = int(fname.stem.split("_")[-1])\n already_done_fovs.append(fov_num)\nnot_processed_fovs = set(running_pipeline.grpd_fovs.groups.keys()).difference(\n set(already_done_fovs)\n)\nrunning_pipeline.data.dataset = running_pipeline.data.dataset.loc[running_pipeline.data.dataset.fov_num.isin(not_processed_fovs), :]\nrunning_pipeline.grpd_fovs = running_pipeline.data.dataset.groupby("fov_num")\nrunning_pipeline.processing_barcoded_eel_step()\n\nrunning_pipeline.save_bits_int = False\nrunning_pipeline.rerun_from_registration_step()\n\nrunning_pipeline.clip_size = 60\nrunning_pipeline.fov_alignment_mode = \'clip\'\nrunning_pipeline.clip_r=0.9\nrunning_pipeline.clip_c=0.25\n\n#running_pipeline.microscope_stitched_remove_dots_eel_graph_step()\nrunning_pipeline.stitch_and_remove_dots_eel_graph_step_global()\n\nrunning_pipeline.bead_alignment_centering_mode = \'middle\'\nrunning_pipeline.bead_alignment_radius = 1500\nrunning_pipeline.processing_assign_dots()\n'
Ending Cell 10-----------------------------------------
Traceback (most recent call last):
File "/home/simone/mini/envs/test_d_seg/bin/papermill", line 8, in <module>
sys.exit(papermill())
File "/home/simone/mini/envs/test_d_seg/lib/python3.8/site-packages/click/core.py", line 1137, in __call__
return self.main(*args, **kwargs)
File "/home/simone/mini/envs/test_d_seg/lib/python3.8/site-packages/click/core.py", line 1062, in main
rv = self.invoke(ctx)
File "/home/simone/mini/envs/test_d_seg/lib/python3.8/site-packages/click/core.py", line 1404, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/home/simone/mini/envs/test_d_seg/lib/python3.8/site-packages/click/core.py", line 763, in invoke
return __callback(*args, **kwargs)
File "/home/simone/mini/envs/test_d_seg/lib/python3.8/site-packages/click/decorators.py", line 26, in new_func
return f(get_current_context(), *args, **kwargs)
File "/home/simone/mini/envs/test_d_seg/lib/python3.8/site-packages/papermill/cli.py", line 250, in papermill
execute_notebook(
File "/home/simone/mini/envs/test_d_seg/lib/python3.8/site-packages/papermill/execute.py", line 122, in execute_notebook
raise_for_execution_errors(nb, output_path)
File "/home/simone/mini/envs/test_d_seg/lib/python3.8/site-packages/papermill/execute.py", line 234, in raise_for_execution_errors
raise error
papermill.exceptions.PapermillExecutionError:
---------------------------------------------------------------------------
Exception encountered at "In [7]":
---------------------------------------------------------------------------
ContainsGroupError Traceback (most recent call last)
<timed exec> in <module>
~/tmp_code/pysmFISH_auto/pysmFISH/pipeline.py in run_full(self)
2051
2052 step_start = datetime.now()
-> 2053 self.processing_fresh_tissue_step()
2054 self.processing_assign_dots()
2055 self.logger.info(
~/tmp_code/pysmFISH_auto/pysmFISH/pipeline.py in processing_fresh_tissue_step(self, parsing, reprocessing, segment, tag_ref_beads, tag_nuclei)
1648 self.ds_nuclei,
1649 self.nuclei_metadata,
-> 1650 ) = fov_processing.process_fresh_sample_graph(
1651 self.experiment_fpath,
1652 self.running_functions,
~/tmp_code/pysmFISH_auto/pysmFISH/fov_processing.py in process_fresh_sample_graph(experiment_fpath, running_functions, analysis_parameters, client, chunks_size, tag_ref_beads, tag_nuclei, eel_metadata, fresh_tissue_segmentation_engine, diameter_size, parsing, overlapping_percentage, save_steps_output)
1621
1622 if presence_beads and presence_nuclei:
-> 1623 _ = client.gather(all_parsing)
1624 io.consolidate_zarr_metadata(parsed_beads_fpath)
1625 io.consolidate_zarr_metadata(parsed_nuclei_fpath)
~/mini/envs/test_d_seg/lib/python3.8/site-packages/distributed/client.py in gather(self, futures, errors, direct, asynchronous)
1946 else:
1947 local_worker = None
-> 1948 return self.sync(
1949 self._gather,
1950 futures,
~/mini/envs/test_d_seg/lib/python3.8/site-packages/distributed/client.py in sync(self, func, asynchronous, callback_timeout, *args, **kwargs)
843 return future
844 else:
--> 845 return sync(
846 self.loop, func, *args, callback_timeout=callback_timeout, **kwargs
847 )
~/mini/envs/test_d_seg/lib/python3.8/site-packages/distributed/utils.py in sync(loop, func, callback_timeout, *args, **kwargs)
324 if error[0]:
325 typ, exc, tb = error[0]
--> 326 raise exc.with_traceback(tb)
327 else:
328 return result[0]
~/mini/envs/test_d_seg/lib/python3.8/site-packages/distributed/utils.py in f()
307 if callback_timeout is not None:
308 future = asyncio.wait_for(future, callback_timeout)
--> 309 result[0] = yield future