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fresh_install_steps.md

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My initial application installation script (using yay)

These are a few program and setting that I use for fresh EndeavourOS installations. These can easily be used for other operating systems by changing the install command (e.g. apt-get in Ubuntu or Debian or dnf in Fedora) and checking the names of programs as they may be listed under slightly different names in your OS's repositories.

OS: EndeavourOS

yay -S cmake gcc-fortran

## Some of these are Gnome specific
yay -S neovim \
       kitty \
       libreoffice-fresh \
       r \
       python3 \
       python-pip \
       gnome-tweaks \
       obsidian \
       lazygit \
       hunspell \ 
       evolution \
       evolution-ews \ 
       nodejs \
       ttf-fira-sans \ 
       zsh \
       rclone \ 
       mariadb \ 
       rstudio-desktop-bin \
       yarn \
       rpi-imager \
       vlc \ 
       ranger \
       nomachine \ 
       nautlius-admin \

yay -S hunspell-en_us

Theming

Gnome extensions

  1. user theme
  2. just perfection
  3. impatience
  4. caffeine
  5. blur my shell

Gnome tweaks modify window buttons

Themes

  1. Graphite GTK
cd /tmp
git clone https://github.com/vinceliuice/Graphite-gtk-theme
cd Graph*
./install.sh --tweaks rimless normal darker

Make sure to switch to dark theme in Gnome 2. Tela icon theme

cd /tmp
git clone https://github.com/vinceliuice/Tela-icon-theme
cd Tela*
./install.sh -a

This installs all color variations, pick both theme and icons using Tweak Tools

Zsh

Install oh-my-zsh

sh -c "$(curl -fsSL https://raw.github.com/ohmyzsh/ohmyzsh/master/tools/install.sh)"

I personally use zsh theme agnoster

Data analysis stuff

R packages to install

x <- c(
  "knitr",
  "plyr",
  "Hmisc",
  "Rmisc",
  "ggplot2",
  "expandFunctions",
  "lme4",
  "vegan",
  "BiodiversityR",
  "reshape",
  "betapart",
  "RAD",
  "multcomp",
  "RColorBrewer"
)

## If these are not installed already and you are running Linux, make sure to install the following:
## In terminal: 
## yay -S cmake gg-fortran (EndeavourOS or other Arch-based distro)
## In R (after calling the x <- c(...) vector above):

install.packages(x)

Fix for rstudio-bin: (You might not have a to do this)

sudo nvim /usr/share/applications/rstudio.desktop and append Exec=/usr/bin/rstudio-bin %F to Exec=/usr/bin/rstudio-bin %f --no-sandbox

Mounting cloud drives using rclone

Download system service here

mkdir ~/mnt
mkdir ~/mnt/drive
mkdir ~/mnt/box

rclone config # Run this to set up Google Drive and Box

sudo nvim /etc/fuse.conf 
# uncomment user_allow_other

systemctl --user daemon-reload
systemctl --user enable rclone@drive
systemctl --user start rclone@drive
systemctl --user enable rclone@box
systemctl --user start rclone@box

Set up bluetooth

sudo systemctl enable bluetooth
sudo systemctl start bluetooth