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I'm trying to run this pipeline on a dataset (currently restricted to 10 singleton exomes) but hail fails to import the vcf file and throws the following error -
TypeError: 'split_multi_hts': Found invalid types for the following fields:
'PGT' found: str expected: call
And now my vcf loads into hail and the mt files are generated. However, I would just like to know if the modification would break something down the line, or whether the modification was an okay thing to do.
The text was updated successfully, but these errors were encountered:
Hello,
I'm trying to run this pipeline on a dataset (currently restricted to 10 singleton exomes) but hail fails to import the vcf file and throws the following error -
I modified the import code from
to
And now my vcf loads into hail and the mt files are generated. However, I would just like to know if the modification would break something down the line, or whether the modification was an okay thing to do.
The text was updated successfully, but these errors were encountered: