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the difference between this two conditions is just max-gap. In my opinion, the max-gap won't influence the cutoff of calling peaks. but i found the number of peaks in 750 will be more than in 250. i'm so confused. when i saw the enrichment of histone mark in iGV, i noticed the peaks called by max-gap 750 were not called by max-gap 250.
could anyone can help me ? thanks a lot!!
YU
The text was updated successfully, but these errors were encountered:
HI, I need to call broad peaks for histone mark. then i used
-broad
-max-gap
parameters. but i met some questions.first:
the difference between this two conditions is just
max-gap
. In my opinion, themax-gap
won't influence the cutoff of calling peaks. but i found the number of peaks in 750 will be more than in 250. i'm so confused. when i saw the enrichment of histone mark in iGV, i noticed the peaks called bymax-gap 750
were not called bymax-gap 250
.could anyone can help me ? thanks a lot!!
YU
The text was updated successfully, but these errors were encountered: