Visualizer for Meta-Omics (ViMO) is an interactive R-Shiny-based application to facilitate the data integration between metagenomics, metatranscriptomics and metaproteomics. At the same time ViMO aims to provide the user with interactive, publication-ready, and relevant graphical representations of the data.
ViMO can be accessed online here:
https://magnusarntzen.shinyapps.io/VisualizerForMetaOmics/
- Metagenomics
- Metatranscriptomics
- Metaproteomics
- Taxonomy
- Quality measures
- KEGG functions and module completion
- Carbohydrate-active enzymes (CAZymes)
- MAG quality
- MAG abundance in various files
- CAZyme categories in various MAGs and their abundancies at transcript- and protein-level
- KEGG categories in various MAGs and their abundancies at transcript- and protein-level
- KEGG module completion fractions to see the metabolic potential for each MAG
Please report bugs through the GitHub issues system.
Copyright (C) 2023, Magnus Arntzen, Norwegian University of Life Science