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DESCRIPTION
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Package: agvgd
Type: Package
Title: An R Implementation of the 'Align-GVGD' Method
Version: 0.1.2
Authors@R: c(
person(given = "Ramiro", family = "Magno",
email = "[email protected]",
role = c("aut", "cre"),
comment = c(ORCID = "0000-0001-5226-3441")),
person(given = "Isabel", family = "Duarte",
email = "[email protected]",
role = "aut",
comment = c(ORCID = "0000-0003-0060-2936")),
person(given = "Ana-Teresa", family = "Maia",
email = "[email protected]", role = "aut",
comment = c(ORCID = "0000-0002-0454-9207")),
person("CINTESIS",
role = c("cph", "fnd"))
)
Description: 'Align-GVGD' ('A-GVGD') is a method to predict the impact of
'missense' substitutions based on the properties of amino acid side
chains and protein multiple sequence alignments
<doi:10.1136/jmg.2005.033878>. 'A-GVGD' is an extension of the original
'Grantham' distance to multiple sequence alignments. This package
provides an alternative R implementation to the web version found on
<http://agvgd.hci.utah.edu/>.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
Imports:
crayon,
dplyr,
glue,
grantham,
magrittr,
purrr,
rlang,
seqinr,
stringr,
tibble,
tidyr,
vctrs
Suggests:
rmarkdown,
covr,
testthat (>= 3.0.0)
Config/testthat/edition: 3
Depends:
R (>= 2.10)
URL: https://maialab.org/agvgd/, https://github.com/maialab/agvgd
BugReports: https://github.com/maialab/agvgd/issues
Enhances:
protean (>= 0.1.1)
Remotes:
maialab/protean