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workshop-01-cf.html
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workshop-01-cf.html
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<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8">
<title>workshop-01-cf</title>
<link rel="stylesheet" type="text/css" href="res/dc.css">
<style type="text/css">
body {
font-family: sans-serif;
}
h1, h2, p {
margin: 0;
padding: 10px 0;
color: #333;
line-height: 20px;
}
a {
color: inherit;
}
.dc-chart g.row text { fill: black; }
</style>
</head>
<body>
<h1>workshop-01-crossfilter <span id="count"><span class="filter-count"></span> / <span class="total-count"></span></h1>
<div style="display: flex; flex-direction: row; flex-wrap: nowrap">
<div id="disease" style="display: flex; flex-direction: column">
<h2>diseases
<a href="javascript:diseaseGraph.filterAll();dc.redrawAll();">filter reset</a>
</h2>
<div></div>
</div>
<div style="display: flex; flex-direction: column">
<div id="gender">
<h2>gender
<a href="javascript:genderGraph.filterAll();dc.redrawAll();">filter reset</a>
</h2>
<div></div>
</div>
<div id="stage">
<h2>stage
<a href="javascript:stageGraph.filterAll();dc.redrawAll();">filter reset</a>
</h2>
<div></div>
</div>
</div>
<div style="display: flex; flex-direction: column">
<div id="age">
<h2>age
<a href="javascript:ageGraph.filterAll();dc.redrawAll();">filter reset</a>
</h2>
<div></div>
</div>
<div id="days" style="display: flex; flex-direction: column">
<h2>years
<a href="javascript:daysChart.filterAll();dc.redrawAll();">filter reset</a>
</h2>
<div></div>
</div>
</div>
</div>
<script src="res/d3.js"></script>
<script src="res/crossfilter.js"></script>
<script src="res/dc.js"></script>
<script type="text/javascript">
var formatPercent = d3.format('.0%');
var diseaseGraph = dc.rowChart('#disease div'),
genderGraph = dc.rowChart('#gender div'),
stageGraph = dc.rowChart('#stage div'),
ageGraph = dc.barChart('#age div'),
daysChart = dc.barChart("#days"),
counterWidget = dc.dataCount("#count");;
function row(d) {
return {
id: d.case_id,
gender: d.case_gender,
disease: d.case_disease_type,
stage: d.case_pathologic_stage,
age: +d.case_age_at_diagnosis,
days: +d.case_days_to_death
}
}
d3.tsv('data/tcga-cases.tsv', row, function(error, data) {
var ndx = crossfilter(data),
all = ndx.groupAll(),
gender_dim = ndx.dimension(function(d) { return d.gender; }),
disease_dim = ndx.dimension(function(d) { return d.disease; }),
stage_dim = ndx.dimension(function(d) { return d.stage; }),
age_dim = ndx.dimension(function(d) { return d.age; }),
days_dim = ndx.dimension(function(d) { return d.days; });
diseaseGraph
.width(600)
.height(800)
.dimension(disease_dim)
.group(disease_dim.group())
.elasticX(true)
.gap(1)
.colors(d3.scale.category20())
.label(function(d) {
if (diseaseGraph.hasFilter() && !diseaseGraph.hasFilter(d.key)) return d.key + " (N/A)";
return d.key + " (" + formatPercent(d.value / all.value()) + ")";
})
.renderLabel(true)
.title(function(d) {
if (diseaseGraph.hasFilter() && !diseaseGraph.hasFilter(d.key)) return d.key + " (N/A)";
return d.key + " (" + formatPercent(d.value / all.value()) + ")";
})
.renderTitle(true);
genderGraph
.width(300)
.height(200)
.dimension(gender_dim)
.group(gender_dim.group())
.elasticX(true)
.ordinalColors(['#fa4b3f', '#1f77b4'])
.label(function(d) {
if (genderGraph.hasFilter() && !genderGraph.hasFilter(d.key)) return d.key + " (N/A)";
return d.key + " (" + formatPercent(d.value / all.value()) + ")";
})
.renderLabel(true)
.title(function(d) {
if (genderGraph.hasFilter() && !genderGraph.hasFilter(d.key)) return d.key + " (N/A)";
return d.key + " (" + formatPercent(d.value / all.value()) + ")";
})
.renderTitle(true);
stageGraph
.width(300)
.height(550 )
.dimension(stage_dim)
.group(stage_dim.group())
.elasticX(true)
.gap(1)
.colors(d3.scale.category10())
.label(function(d) {
if (stageGraph.hasFilter() && !stageGraph.hasFilter(d.key)) return d.key + " (N/A)";
return d.key + " (" + formatPercent(d.value / all.value()) + ")";
})
.renderLabel(true)
.title(function(d) {
if (stageGraph.hasFilter() && !stageGraph.hasFilter(d.key)) return d.key + " (N/A)";
return d.key + " (" + formatPercent(d.value / all.value()) + ")";
})
.renderTitle(true);
ageGraph
.width(800)
.height(350 )
.dimension(age_dim)
.group(age_dim.group())
.colors(d3.scale.category10())
.x(d3.scale.linear().domain([10,80]))
.elasticY(true);;
daysChart
.width(800)
.height(400)
.dimension(days_dim)
.group(days_dim.group().reduceCount(function(d) { return d.days/365}))
.x(d3.scale.linear().domain([0,30]))
.elasticY(true);
counterWidget
.dimension(ndx)
.group(all);
dc.renderAll();
});
</script>
</body>
</html>