{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":288476399,"defaultBranch":"master","name":"MitoHiFi","ownerLogin":"marcelauliano","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2020-08-18T14:19:33.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/4116164?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1710779916.0","currentOid":""},"activityList":{"items":[{"before":"a3d449d3354addc9cbe3af69ad7e77a15d37b748","after":"1683dbc6c0d0a0d4ea7b0aa5aa1e1701b63cb6aa","ref":"refs/heads/master","pushedAt":"2024-04-15T13:52:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"marcelauliano","name":"Marcela Uliano-Silva ","path":"/marcelauliano","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4116164?s=80&v=4"},"commit":{"message":"test","shortMessageHtmlLink":"test"}},{"before":"cb7c8ac131fd5ed88c519ec5e777a1e6ae222326","after":"a3d449d3354addc9cbe3af69ad7e77a15d37b748","ref":"refs/heads/master","pushedAt":"2024-03-18T16:46:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"marcelauliano","name":"Marcela Uliano-Silva ","path":"/marcelauliano","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4116164?s=80&v=4"},"commit":{"message":"version readme","shortMessageHtmlLink":"version readme"}},{"before":"05b49fb16a7f48196f88830f7325c687cf486fd2","after":"cb7c8ac131fd5ed88c519ec5e777a1e6ae222326","ref":"refs/heads/master","pushedAt":"2024-03-18T16:25:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"marcelauliano","name":"Marcela Uliano-Silva ","path":"/marcelauliano","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4116164?s=80&v=4"},"commit":{"message":"changes","shortMessageHtmlLink":"changes"}},{"before":"e4f2197c873378972d00eddbed669333d923a3b0","after":"05b49fb16a7f48196f88830f7325c687cf486fd2","ref":"refs/heads/master","pushedAt":"2024-03-12T08:05:51.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"marcelauliano","name":"Marcela Uliano-Silva ","path":"/marcelauliano","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4116164?s=80&v=4"},"commit":{"message":"Merge pull request #78 from ksenia-krasheninnikova/ncbi_api_key\n\nUpdated mito reference script to accept the ncbi api key","shortMessageHtmlLink":"Merge pull request #78 from ksenia-krasheninnikova/ncbi_api_key"}},{"before":"26217066fcf5a224be8dc269c57373e4eea2e14d","after":"e4f2197c873378972d00eddbed669333d923a3b0","ref":"refs/heads/master","pushedAt":"2024-02-20T17:23:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jgnunes","name":"João G. Ferreira","path":"/jgnunes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22843614?s=80&v=4"},"commit":{"message":"Remove commented-out lines leftover from previous commit (2621706)","shortMessageHtmlLink":"Remove commented-out lines leftover from previous commit (2621706)"}},{"before":"109c7e45cbc3c51422686d9694dd34b34e53605b","after":"26217066fcf5a224be8dc269c57373e4eea2e14d","ref":"refs/heads/master","pushedAt":"2024-02-20T17:18:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jgnunes","name":"João G. Ferreira","path":"/jgnunes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22843614?s=80&v=4"},"commit":{"message":"No longer modify input contig file when fixing headers","shortMessageHtmlLink":"No longer modify input contig file when fixing headers"}},{"before":"c6925f64cda1f7fd7b051d7aed186afcffc11ea3","after":"109c7e45cbc3c51422686d9694dd34b34e53605b","ref":"refs/heads/master","pushedAt":"2024-01-23T11:25:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"marcelauliano","name":"Marcela Uliano-Silva ","path":"/marcelauliano","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4116164?s=80&v=4"},"commit":{"message":"Update github-actions-integration-test.yml","shortMessageHtmlLink":"Update github-actions-integration-test.yml"}},{"before":"2b7ae8408c02f485c5c8b8933e4d5fce50482808","after":"c6925f64cda1f7fd7b051d7aed186afcffc11ea3","ref":"refs/heads/master","pushedAt":"2024-01-23T11:25:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"marcelauliano","name":"Marcela Uliano-Silva ","path":"/marcelauliano","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4116164?s=80&v=4"},"commit":{"message":"Update github-actions-build-code.yml","shortMessageHtmlLink":"Update github-actions-build-code.yml"}},{"before":"f3be2271009f2a1b86ff04b5d88232e2219004b5","after":"2b7ae8408c02f485c5c8b8933e4d5fce50482808","ref":"refs/heads/master","pushedAt":"2024-01-23T11:22:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"marcelauliano","name":"Marcela Uliano-Silva ","path":"/marcelauliano","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4116164?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"e3a100df5efc7d004d3c5db8a99ef85e882a4357","after":"f3be2271009f2a1b86ff04b5d88232e2219004b5","ref":"refs/heads/master","pushedAt":"2024-01-23T11:21:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"marcelauliano","name":"Marcela Uliano-Silva ","path":"/marcelauliano","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4116164?s=80&v=4"},"commit":{"message":"Update github-actions-build-code.yml","shortMessageHtmlLink":"Update github-actions-build-code.yml"}},{"before":"b60a99de33582707e9c6fbfd8f51f33b5cedb3b6","after":"e3a100df5efc7d004d3c5db8a99ef85e882a4357","ref":"refs/heads/master","pushedAt":"2024-01-23T11:21:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"marcelauliano","name":"Marcela Uliano-Silva ","path":"/marcelauliano","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4116164?s=80&v=4"},"commit":{"message":"Update github-actions-integration-test.yml","shortMessageHtmlLink":"Update github-actions-integration-test.yml"}},{"before":"96e45b3a8245a13887e008b414182bfddac4e9a6","after":"b60a99de33582707e9c6fbfd8f51f33b5cedb3b6","ref":"refs/heads/master","pushedAt":"2024-01-23T11:19:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"marcelauliano","name":"Marcela Uliano-Silva ","path":"/marcelauliano","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4116164?s=80&v=4"},"commit":{"message":"Update mitohifi.py\n\nWhen using flag -a funghi, accept contigs larger than reference used, as done for plants.\r\nNo extra code change, just changed how to represent contigs_stats.tsv. Now the second file line presents the final_mitogenome stats again, but if its original name. And if mitohifi is ran from Hicanu contigs, contigs_stats.tsv will show if the contigs were linear or circular by attaching a \"l\" or \"l\" to the contig name","shortMessageHtmlLink":"Update mitohifi.py"}},{"before":"87e1cfa13cde87c034a1f1524faff9c3a353985e","after":"96e45b3a8245a13887e008b414182bfddac4e9a6","ref":"refs/heads/master","pushedAt":"2024-01-11T17:28:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"marcelauliano","name":"Marcela Uliano-Silva ","path":"/marcelauliano","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4116164?s=80&v=4"},"commit":{"message":"funghi","shortMessageHtmlLink":"funghi"}},{"before":"6246e129e9d4d8afc751525e2ccf8a89891a3c36","after":"87e1cfa13cde87c034a1f1524faff9c3a353985e","ref":"refs/heads/master","pushedAt":"2024-01-11T14:05:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"marcelauliano","name":"Marcela Uliano-Silva ","path":"/marcelauliano","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4116164?s=80&v=4"},"commit":{"message":"funghi-largecontigs","shortMessageHtmlLink":"funghi-largecontigs"}},{"before":"aa90bf1560647333165252b6f88ef4cb11e57e73","after":"6246e129e9d4d8afc751525e2ccf8a89891a3c36","ref":"refs/heads/master","pushedAt":"2023-12-15T13:51:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jgnunes","name":"João G. Ferreira","path":"/jgnunes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22843614?s=80&v=4"},"commit":{"message":"Allow larger fungi contigs\n\nSet parsing criteria for fungi contigs the same as for the plant contigs, i.e., keep contigs that are up to 10 times as big as the reference mitogenome","shortMessageHtmlLink":"Allow larger fungi contigs"}},{"before":"bd96b1d8cd39628d4348a3d24f88e4a4d1aef99c","after":"aa90bf1560647333165252b6f88ef4cb11e57e73","ref":"refs/heads/master","pushedAt":"2023-11-17T13:08:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"marcelauliano","name":"Marcela Uliano-Silva ","path":"/marcelauliano","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4116164?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"7e6c32b49ff8d09c5b59d30a80111642dd738202","after":"bd96b1d8cd39628d4348a3d24f88e4a4d1aef99c","ref":"refs/heads/master","pushedAt":"2023-11-17T13:07:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"marcelauliano","name":"Marcela Uliano-Silva ","path":"/marcelauliano","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4116164?s=80&v=4"},"commit":{"message":"Update github-actions-integration-test.yml","shortMessageHtmlLink":"Update github-actions-integration-test.yml"}},{"before":"a642ba2db2c163dc3a76b42807e6c1bd231e50b3","after":"7e6c32b49ff8d09c5b59d30a80111642dd738202","ref":"refs/heads/master","pushedAt":"2023-11-16T15:48:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"marcelauliano","name":"Marcela Uliano-Silva ","path":"/marcelauliano","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4116164?s=80&v=4"},"commit":{"message":"parsing contigs_stats","shortMessageHtmlLink":"parsing contigs_stats"}},{"before":"0b65177acf9e54e8472b2bcbea0701bbe772a218","after":"a642ba2db2c163dc3a76b42807e6c1bd231e50b3","ref":"refs/heads/master","pushedAt":"2023-11-16T15:41:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"marcelauliano","name":"Marcela Uliano-Silva ","path":"/marcelauliano","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4116164?s=80&v=4"},"commit":{"message":"parsing of contigs_stats","shortMessageHtmlLink":"parsing of contigs_stats"}},{"before":"9a76a7d4eeefb1440ffd0602c6bbc11c7b2812e6","after":"2cfc1ef59a6c861392ba6fb493221b119bcd1357","ref":"refs/heads/stats","pushedAt":"2023-11-07T16:25:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"marcelauliano","name":"Marcela Uliano-Silva ","path":"/marcelauliano","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4116164?s=80&v=4"},"commit":{"message":"Update mitohifi.py","shortMessageHtmlLink":"Update mitohifi.py"}},{"before":"22a74e889b9c9c717f7e6e0ecbc8bbbc7a677497","after":"9a76a7d4eeefb1440ffd0602c6bbc11c7b2812e6","ref":"refs/heads/stats","pushedAt":"2023-11-07T15:28:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"marcelauliano","name":"Marcela Uliano-Silva ","path":"/marcelauliano","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4116164?s=80&v=4"},"commit":{"message":"Update mitohifi.py","shortMessageHtmlLink":"Update mitohifi.py"}},{"before":"bfa03c4b43cb0c9f8da4795f97d3bd9d3952f082","after":"22a74e889b9c9c717f7e6e0ecbc8bbbc7a677497","ref":"refs/heads/stats","pushedAt":"2023-11-07T14:38:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"marcelauliano","name":"Marcela Uliano-Silva ","path":"/marcelauliano","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4116164?s=80&v=4"},"commit":{"message":"Update github-actions-build-code.yml","shortMessageHtmlLink":"Update github-actions-build-code.yml"}},{"before":"67afec1bbcaba455f9a04154224127ab36b0f3dc","after":"bfa03c4b43cb0c9f8da4795f97d3bd9d3952f082","ref":"refs/heads/stats","pushedAt":"2023-11-07T14:37:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"marcelauliano","name":"Marcela Uliano-Silva ","path":"/marcelauliano","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4116164?s=80&v=4"},"commit":{"message":"Update mitohifi.py","shortMessageHtmlLink":"Update mitohifi.py"}},{"before":"fd384c05c493a38a7317d7be8382734b2ad389b1","after":"67afec1bbcaba455f9a04154224127ab36b0f3dc","ref":"refs/heads/stats","pushedAt":"2023-11-07T14:14:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"marcelauliano","name":"Marcela Uliano-Silva ","path":"/marcelauliano","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4116164?s=80&v=4"},"commit":{"message":"Update github-actions-build-code.yml","shortMessageHtmlLink":"Update github-actions-build-code.yml"}},{"before":"272c9131d161567788e330820c481e26c1174c64","after":"fd384c05c493a38a7317d7be8382734b2ad389b1","ref":"refs/heads/stats","pushedAt":"2023-11-07T14:11:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"marcelauliano","name":"Marcela Uliano-Silva ","path":"/marcelauliano","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4116164?s=80&v=4"},"commit":{"message":"Update github-actions-build-code.yml","shortMessageHtmlLink":"Update github-actions-build-code.yml"}},{"before":"0cc5c66f015d012b4a95df182e2b614d07e46a49","after":"0b65177acf9e54e8472b2bcbea0701bbe772a218","ref":"refs/heads/master","pushedAt":"2023-11-07T14:09:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"marcelauliano","name":"Marcela Uliano-Silva ","path":"/marcelauliano","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4116164?s=80&v=4"},"commit":{"message":"Update github-actions-build-base.yml","shortMessageHtmlLink":"Update github-actions-build-base.yml"}},{"before":"215e404769a2b1644949937b078d885068ea2044","after":"272c9131d161567788e330820c481e26c1174c64","ref":"refs/heads/stats","pushedAt":"2023-11-07T14:08:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"marcelauliano","name":"Marcela Uliano-Silva ","path":"/marcelauliano","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4116164?s=80&v=4"},"commit":{"message":"Update mitohifi.py","shortMessageHtmlLink":"Update mitohifi.py"}},{"before":"a0f131d687c9a8f792fc4627fb2b1ad36e493aef","after":"0cc5c66f015d012b4a95df182e2b614d07e46a49","ref":"refs/heads/master","pushedAt":"2023-11-07T14:07:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"marcelauliano","name":"Marcela Uliano-Silva ","path":"/marcelauliano","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4116164?s=80&v=4"},"commit":{"message":"Update mitohifi.py","shortMessageHtmlLink":"Update mitohifi.py"}},{"before":"215e404769a2b1644949937b078d885068ea2044","after":"a0f131d687c9a8f792fc4627fb2b1ad36e493aef","ref":"refs/heads/master","pushedAt":"2023-11-07T14:05:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"marcelauliano","name":"Marcela Uliano-Silva ","path":"/marcelauliano","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4116164?s=80&v=4"},"commit":{"message":"stats test","shortMessageHtmlLink":"stats test"}},{"before":null,"after":"215e404769a2b1644949937b078d885068ea2044","ref":"refs/heads/stats","pushedAt":"2023-11-07T13:33:51.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"marcelauliano","name":"Marcela Uliano-Silva ","path":"/marcelauliano","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4116164?s=80&v=4"},"commit":{"message":"editing readme","shortMessageHtmlLink":"editing readme"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEMP3DxwA","startCursor":null,"endCursor":null}},"title":"Activity · marcelauliano/MitoHiFi"}