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Example data run error: FileNotFoundError: [Errno 2] No such file or directory: 'tig00007572_1.annotation.1.individual.stats' #51
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Hi yang, |
Hi Marcela, I'm having a similar issue:
I'm running the following command:
The pipeline works without the --mitos tag. I'm attaching the log file as well |
Hi bm-silva, |
Hi @bm-silva, can you share your tree of files? You can run the Also, can you double check if there already was a MITOS installation in your environment before running the container? Maybe run Last but not least, would you be able to share your input Best, |
hi @jgnunes, here is the following tree:
there is no mitos installed in my environment, so the which runmitos.py returns no runmitos.py in $PATH. im afraid i can not share you the fasta file. its a private work and its not yet published, sorry |
Respected developer:
hello!
I installed all the required dependencies for MitoHiFi using conda and also correctly installed MitoFinder. When running the provided example data with the latest version(v3.01) of the software, I encountered the following error:
In fact, I encountered the same problem when running this software on my data, and the error message is similar to the following.
FileNotFoundError: [Errno 2] No such file or directory:'ptg000038l.annotation.1.individual.stats'
Moreover, this error occurs in both v3.0 and v3.01. Can you help me resolve this issue?
Good luck!
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