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martinschorb/README.md

Hi there 👋

I started as a scientist but pretty soon realized that creating software to help others achieve their research goals is my main motivation.

From simple data analysis (geometrical relations) and image processing scripts, this lead me to develop a Python package for guiding Transmission EM image acquisition based on image features. I always like to make powerful computational tools available to end users, so I developed some handy tools for accessing a compute cluster.

My most recent and biggest project so far is a dash-based WebUI and the backend code for running an alignment pipeline for large volume image data on HPC hardware.

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  1. volumealign volumealign Public

    WebUI for the Render Alignment Pipeline on the HPC cluster

    Python

  2. mobie/mobie-utils-python mobie/mobie-utils-python Public

    Python tools for MoBIE

    Python 9 5

  3. rendermodules-addons rendermodules-addons Public

    backend processing scripts for aligning large volume EM data using Render.

    Python

  4. mobie/mobie-napari-bridge mobie/mobie-napari-bridge Public

    A napari plugin to interact with MoBIE projects

    Python 1

  5. pyem pyem Public

    Python package to interact with SerialEM to automate Transmission Electron Microscopy

    Python

  6. dask/dask-image dask/dask-image Public

    Distributed image processing

    Python 211 47