setup.py

from setuptools import setup, find_packages

# Version is determined by setuptools-scm in pyproject.toml according to git
# tag numbering.
setup(
    name="netam",
    url="https://github.com/matsengrp/netam.git",
    author="Matsen Group",
    author_email="ematsen@gmail.com",
    description="Neural network models for antibody affinity maturation",
    long_description=open("README.md").read(),
    long_description_content_type="text/markdown",
    packages=find_packages(),
    python_requires=">=3.9,<3.13",
    install_requires=[
        "biopython",
        "natsort",
        "optuna",
        "pandas",
        "pyyaml",
        "requests",
        "tensorboardX",
        "torch",
        "tqdm",
        "fire",
    ],
    classifiers=[
        "Development Status :: 3 - Alpha",
        "Intended Audience :: Science/Research",
        "License :: OSI Approved :: MIT License",
        "Natural Language :: English",
        "Programming Language :: Python :: 3.9",
    ],
    entry_points={
        "console_scripts": ["netam=netam.cli:main"],
    },
)