simpler build and test

.github/workflows/build-and-test.yml

@@ -21,22 +21,10 @@ jobs:
         with:
           path: main
 
-      - name: Setup epam ssh key
-        uses: webfactory/[email protected]
-        with:
-          ssh-private-key: |
-            ${{ secrets.SHMPLE_DEPLOY_PRIVATE_KEY }}
-            ${{ secrets.EPAM_DEPLOY_PRIVATE_KEY }}
-
-      - name: Clone Epam
-        shell: bash -l {0}
-        run: |
-          git clone [email protected]:matsengrp/epam.git
-
       - uses: mamba-org/setup-micromamba@v1
         with:
           micromamba-version: '1.5.6-0' # any version from https://github.com/mamba-org/micromamba-releases
-          environment-name: epam
+          environment-name: netam
           create-args: >-
             python=${{ matrix.python-version }}
             datrie
@@ -55,10 +43,7 @@ jobs:
       - name: Install
         shell: bash -l {0}
         run: |
-          export GIT_CLONE_PROTECTION_ACTIVE=false
-          cd epam
-          make install
-          cd ../main
+          cd main
           pip install .
 
       - name: Test

requirements.txt

@@ -0,0 +1,6 @@
+black
+pulp==2.7.0   # see issue https://github.com/snakemake/snakemake/issues/2607
+pytest
+snakemake
+tensorboardX
+typing_extensions