From 0b70084c633b4cc24057e0baed12b8606add77f2 Mon Sep 17 00:00:00 2001
From: Erick Matsen <ematsen@gmail.com>
Date: Mon, 10 Jun 2024 14:49:04 -0700
Subject: [PATCH] simpler build and test

---
 .github/workflows/build-and-test.yml | 19 ++-----------------
 requirements.txt                     |  6 ++++++
 2 files changed, 8 insertions(+), 17 deletions(-)
 create mode 100644 requirements.txt

diff --git a/.github/workflows/build-and-test.yml b/.github/workflows/build-and-test.yml
index b561159c..fb34f7d5 100644
--- a/.github/workflows/build-and-test.yml
+++ b/.github/workflows/build-and-test.yml
@@ -21,22 +21,10 @@ jobs:
         with:
           path: main
 
-      - name: Setup epam ssh key
-        uses: webfactory/ssh-agent@v0.9.0
-        with:
-          ssh-private-key: |
-            ${{ secrets.SHMPLE_DEPLOY_PRIVATE_KEY }}
-            ${{ secrets.EPAM_DEPLOY_PRIVATE_KEY }}
-
-      - name: Clone Epam
-        shell: bash -l {0}
-        run: |
-          git clone git@github.com:matsengrp/epam.git
-
       - uses: mamba-org/setup-micromamba@v1
         with:
           micromamba-version: '1.5.6-0' # any version from https://github.com/mamba-org/micromamba-releases
-          environment-name: epam
+          environment-name: netam
           create-args: >-
             python=${{ matrix.python-version }}
             datrie
@@ -55,10 +43,7 @@ jobs:
       - name: Install
         shell: bash -l {0}
         run: |
-          export GIT_CLONE_PROTECTION_ACTIVE=false
-          cd epam
-          make install
-          cd ../main
+          cd main
           pip install .
 
       - name: Test
diff --git a/requirements.txt b/requirements.txt
new file mode 100644
index 00000000..eaf443da
--- /dev/null
+++ b/requirements.txt
@@ -0,0 +1,6 @@
+black
+pulp==2.7.0   # see issue https://github.com/snakemake/snakemake/issues/2607
+pytest
+snakemake
+tensorboardX
+typing_extensions