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Add new AA information to DASMDataset and calculate per-AA loss #65

Closed
3 tasks done
Tracked by #52
matsen opened this issue Oct 3, 2024 · 0 comments · Fixed by #66
Closed
3 tasks done
Tracked by #52

Add new AA information to DASMDataset and calculate per-AA loss #65

matsen opened this issue Oct 3, 2024 · 0 comments · Fixed by #66

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@matsen
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matsen commented Oct 3, 2024

If the performance is significantly worse, then that motivates keeping the existing loss function and just adding an additional loss function that will be "what amino acid is good conditioned on there being a substitution" to the BCE loss, and perhaps slowly ramping it up.

@matsen matsen changed the title Add new AA information to DNSMDataset (new_aa_idxs) and calculate per-AA loss Add new AA information to DASMDataset and calculate per-AA loss Oct 3, 2024
@matsen matsen linked a pull request Oct 15, 2024 that will close this issue
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