From 22762c4cd4cf8d8ab0851eeb2789699884c9751a Mon Sep 17 00:00:00 2001
From: maxibor <maxime.borry@gmail.com>
Date: Thu, 8 Feb 2018 17:37:55 +0100
Subject: [PATCH] readme update

---
 README.md                          |   4 ++++
 flowchart.png => img/flowchart.png | Bin
 2 files changed, 4 insertions(+)
 rename flowchart.png => img/flowchart.png (100%)

diff --git a/README.md b/README.md
index a6c6bb6..164db54 100644
--- a/README.md
+++ b/README.md
@@ -55,3 +55,7 @@ From NCBI [Refseq organelles genomes](https://www.ncbi.nlm.nih.gov/genome/organe
 ```
 nextflow run organdiet.nf --reads '/path/to/reads/*_R{1,2}.fastq.gz' --ctrl '/path/to/negative/control/reads/*_R{1,2}.fastq.gz' --btindex '/path/to/bowtie2/index/organellome' --hgindex 'hs_genome/Homo_sapiens/Ensembl/GRCh37/Sequence/Bowtie2Index/genome' --nrdb 'nr_diamond_db/nr' -with-report run_report.html -with-timeline timeline_report.html
 ```
+
+# The Pipeline workflow
+
+![](./img/flowchart.png)
diff --git a/flowchart.png b/img/flowchart.png
similarity index 100%
rename from flowchart.png
rename to img/flowchart.png