INSTALL

#!/bin/bash
#Last modified: Jul 23, 6 AM

set -e

failureMessage(){
   if [ $? -eq 0 ]
   then
      #echo "----------------------------"
      echo "$1 completed successfully."
      #echo "----------------------------"
   else
      #echo "----------------------------"
      echo "$1 FAILED."
      #echo "----------------------------"
      exit
   fi
}

function abspath {
    if [[ -d "$1" ]]
    then
        pushd "$1" >/dev/null
        pwd
        popd >/dev/null
    elif [[ -e "$1" ]]
    then
        pushd "$(dirname "$1")" >/dev/null
        echo "$(pwd)/$(basename "$1")"
        popd >/dev/null
    else
        echo "$1" does not exist! >&2
        return 127
    fi
}

PPATH=$(abspath $(dirname $0))

cd $PPATH/

rm -rf $PPATH/dependencies/bcalm
rm -rf $PPATH/dependencies/kff-tools
rm -rf $PPATH/dependencies/dsk
rm -rf $PPATH/bin/essAuxKffTools
rm -rf $PPATH/bin/essAuxBlight
rm -rf $PPATH/bin/essAuxCompress
rm -rf $PPATH/bin/essAuxDecompress
rm -rf $PPATH/bin/essAuxDsk
rm -rf $PPATH/bin/essAuxDsk2ascii
rm -rf $PPATH/bin/essAuxBcalm
rm -rf $PPATH/bin/essAuxMFCompressC
rm -rf $PPATH/bin/essAuxMFCompressD
make -f $PPATH/dependencies/mfc1.01/Makefile.linux clean

cd src/ ; make ; cd ../
failureMessage "ESS-Compress core program installation"
#echo "Now installing third party softwares (note that: you can skip the rest of the steps and still try out our tool!)"

#CMake 3.1+; see http://www.cmake.org/cmake/resources/software.html
#C++/11 capable compiler (e.g. gcc 4.7+, clang 3.5+, Apple/clang 6.0+).

mkdir -p dependencies
cd dependencies




echo "Now installing Blight........"
cd blight
make clean
make -j 8
cp blight-ess ../../bin/essAuxBlight
make clean
cd ../

echo "Now installing kff-tools........"

git clone --recursive https://github.com/Kmer-File-Format/kff-tools
cd kff-tools
mkdir build && cd build && cmake .. && make -j 8
cd ../../
cp kff-tools/bin/kff-tools ../bin/essAuxKffTools
rm -rf kff-tools

echo "Now installing DSK........"
# get a local copy of source code of DSK
git clone --recursive https://github.com/GATB/dsk.git

# compile the code an run a simple test on your computer
cd dsk
sh INSTALL
failureMessage "DSK installation"
echo $PWD
mv build/bin/dsk ../../bin/essAuxDsk
mv build/bin/dsk2ascii ../../bin/essAuxDsk2ascii

echo "Now installing BCALM........"
cd ../../
cd dependencies
git clone --recursive https://github.com/GATB/bcalm
cd bcalm
mkdir build;  cd build;  cmake ..;
failureMessage cmake
make -j 8 #after this we are inside build
failureMessage "BCALM installation"
mv bcalm ../../../bin/essAuxBcalm

#echo "Now installing MFCompress........"
#cd ../../../
#cd dependencies/mfc1.01/
#make -f Makefile.linux
#failureMessage "MFC installation"
#mv MFCompressC ../../bin/essAuxMFCompressC
#mv MFCompressD ../../bin/essAuxMFCompressD
#make -f Makefile.linux clean

cd ../../
rm -rf dependencies/dsk
rm -rf dependencies/bcalm

#export PATH="$PWD/bin:$PATH"

echo "ESS-Compress installation (from source) was successful!!"