diff --git a/scripts/order_query_results.sh b/scripts/order_query_results.sh index 8108bc9..7cba752 100755 --- a/scripts/order_query_results.sh +++ b/scripts/order_query_results.sh @@ -55,7 +55,7 @@ cat temp.${sabutanOutput}.leaf_to_queries \ # cat ${queryFiles} \ | python ${thisScriptDir}/pluck_from_fasta.py --sequences=${queries} \ - | ${sabutan} query \ + | sabutan query \ --tree=temp.${sabutanOutput}.${leaf}.sbt --threshold=${specificity} \ --countallkmerhits \ | awk '/^[*]/ { } diff --git a/scripts/order_query_results_workaround.sh b/scripts/order_query_results_workaround.sh index f7c718f..c3ce52c 100755 --- a/scripts/order_query_results_workaround.sh +++ b/scripts/order_query_results_workaround.sh @@ -57,7 +57,7 @@ cat temp.${tempFileId}.leaf_to_queries \ # cat ${queryFiles} \ | python ${thisScriptDir}/pluck_from_fasta.py --sequences=${queries} \ - | ${sabutan} query \ + | sabutan query \ --tree=temp.${tempFileId}.${leaf}.sbt --threshold=${specificity} \ --countallkmerhits \ | awk '/^[*]/ { }