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Diff for: README.md

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TwoPaCo 0.9.1
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TwoPaCo 0.9.2
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Release date: 29th March 2017
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Release date: 18th May 2017
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=============================
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Authors

Diff for: example/README.md

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Here is an example of the de Bruijn graph built from a small input with k=11.
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Below are commands used to produce the files. Run TwoPaCo:
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twopaco -f 20 -k 11 example.fa -o example1.dbg
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twopaco -f 20 -k 11 example.fa -o example.dbg
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Get DOT file for Graphviz visualisation and render it:
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Diff for: src/graphconstructor/CMakeLists.txt

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@@ -13,4 +13,4 @@ target_link_libraries(twopaco "tbb")
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set(CPACK_PACKAGE_VERSION_MAJOR "0")
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set(CPACK_PACKAGE_VERSION_MINOR "9")
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set(CPACK_PACKAGE_VERSION_PATCH "0")
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set(CPACK_PACKAGE_VERSION_PATCH "2")

Diff for: src/graphconstructor/constructor.cpp

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OddConstraint constraint;
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try
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{
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TCLAP::CmdLine cmd("Program for construction of the condensed de Bruijn graph from complete genomes", ' ', "0.9.0");
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TCLAP::CmdLine cmd("Program for construction of the condensed de Bruijn graph from complete genomes", ' ', "0.9.2");
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TCLAP::ValueArg<unsigned int> kvalue("k",
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"kvalue",

Diff for: src/graphdump/CMakeLists.txt

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set(CPACK_PACKAGE_VERSION_MAJOR "0")
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set(CPACK_PACKAGE_VERSION_MINOR "9")
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set(CPACK_PACKAGE_VERSION_PATCH "0")
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set(CPACK_PACKAGE_VERSION_PATCH "2")

Diff for: src/graphdump/graphdump.cpp

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std::copy(format.begin(), format.begin(), std::ostream_iterator<std::string>(formatString, "|"));
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try
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{
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TCLAP::CmdLine cmd("This utility converts the binary output of TwoPaCo to another format", ' ', "0.9.0");
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TCLAP::CmdLine cmd("This utility converts the binary output of TwoPaCo to another format", ' ', "0.9.2");
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TCLAP::SwitchArg prefix("", "prefix", "Add a prefix to segments in GFA (in case if you have genomes with identical FASTA headers)", cmd, false);
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TCLAP::UnlabeledValueArg<std::string> inputFileName("infile",

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