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bryo-full.obo
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format-version: 1.2
data-version: bryo/releases/2023-01-24/bryo-full.owl
subsetdef: 1_STAR ""
subsetdef: 3_STAR ""
subsetdef: attribute_slim ""
subsetdef: cell_quality ""
subsetdef: gocheck_do_not_annotate ""
subsetdef: gocheck_do_not_manually_annotate ""
subsetdef: goslim_agr ""
subsetdef: goslim_candida ""
subsetdef: goslim_chembl ""
subsetdef: goslim_drosophila ""
subsetdef: goslim_flybase_ribbon ""
subsetdef: goslim_generic ""
subsetdef: goslim_metagenomics ""
subsetdef: goslim_mouse ""
subsetdef: goslim_pir ""
subsetdef: goslim_plant ""
subsetdef: goslim_pombe ""
subsetdef: goslim_yeast ""
subsetdef: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension ""
subsetdef: http://purl.obolibrary.org/obo/valid_for_go_gp2term ""
subsetdef: http://purl.obolibrary.org/obo/valid_for_go_ontology ""
subsetdef: http://purl.obolibrary.org/obo/valid_for_gocam ""
subsetdef: mpath_slim ""
subsetdef: prokaryote_subset ""
subsetdef: ro-eco ""
subsetdef: RO:0002259 ""
subsetdef: ubprop:upper_level ""
subsetdef: value_slim ""
synonymtypedef: blast_name ""
synonymtypedef: common_name ""
synonymtypedef: genbank_common_name ""
synonymtypedef: IUPAC_NAME ""
synonymtypedef: synonym ""
ontology: bryo/bryo-full
property_value: http://purl.org/dc/terms/description "None" xsd:string
property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/unspecified
property_value: http://purl.org/dc/terms/title "Bryozoan Attribute Ontology" xsd:string
property_value: owl:versionInfo "2023-01-24" xsd:string
[Term]
id: BFO:0000002
name: continuant
def: "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts." []
disjoint_from: BFO:0000003 ! occurrent
relationship: part_of BFO:0000002 ! continuant
[Term]
id: BFO:0000003
name: occurrent
def: "An entity that has temporal parts and that happens, unfolds or develops through time." []
relationship: part_of BFO:0000003 ! occurrent
[Term]
id: BFO:0000004
name: independent continuant
def: "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything." []
is_a: BFO:0000002 ! continuant
disjoint_from: BFO:0000020 ! specifically dependent continuant
relationship: part_of BFO:0000004 ! independent continuant
[Term]
id: BFO:0000015
name: process
def: "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t." []
is_a: BFO:0000003 ! occurrent
[Term]
id: BFO:0000016
name: disposition
is_a: BFO:0000017 ! realizable entity
disjoint_from: BFO:0000023 ! role
[Term]
id: BFO:0000017
name: realizable entity
def: "A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances." []
is_a: BFO:0000020 ! specifically dependent continuant
disjoint_from: BFO:0000019 ! quality
relationship: part_of BFO:0000017 ! realizable entity
[Term]
id: BFO:0000019
name: quality
is_a: BFO:0000020 ! specifically dependent continuant
relationship: part_of BFO:0000019 ! quality
[Term]
id: BFO:0000020
name: specifically dependent continuant
def: "A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same." []
is_a: BFO:0000002 ! continuant
relationship: part_of BFO:0000020 ! specifically dependent continuant
[Term]
id: BFO:0000023
name: role
def: "A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts." []
is_a: CHEBI:50906 ! role
equivalent_to: CHEBI:50906 ! role
[Term]
id: BFO:0000034
name: function
is_a: BFO:0000016 ! disposition
[Term]
id: BFO:0000040
name: material entity
def: "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time." []
is_a: BFO:0000004 ! independent continuant
[Term]
id: BRYO:0000000
name: root node
[Term]
id: CHEBI:10545
name: electron
namespace: chebi_ontology
def: "Elementary particle not affected by the strong force having a spin 1/2, a negative elementary charge and a rest mass of 0.000548579903(13) u, or 0.51099906(15) MeV." []
subset: 3_STAR
synonym: "beta" RELATED [IUPAC]
synonym: "beta(-)" RELATED [ChEBI]
synonym: "beta-particle" RELATED [IUPAC]
synonym: "e" RELATED [IUPAC]
synonym: "e(-)" RELATED [UniProt]
synonym: "e-" RELATED [KEGG_COMPOUND]
synonym: "electron" EXACT [KEGG_COMPOUND]
synonym: "electron" EXACT IUPAC_NAME [IUPAC]
synonym: "electron" EXACT [ChEBI]
synonym: "Elektron" RELATED [ChEBI]
synonym: "negatron" RELATED [IUPAC]
xref: KEGG:C05359
xref: PMID:21614077 {source="Europe PMC"}
xref: Wikipedia:Electron
is_a: CHEBI:36338 ! lepton
property_value: http://purl.obolibrary.org/obo/chebi/charge "-1" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/mass "0.000548579903" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "0.0" xsd:string
[Term]
id: CHEBI:138675
name: gas molecular entity
namespace: chebi_ontology
def: "Any main group molecular entity that is gaseous at standard temperature and pressure (STP; 0degreeC and 100 kPa)." []
subset: 3_STAR
synonym: "gas molecular entities" RELATED [ChEBI]
synonym: "gaseous molecular entities" RELATED [ChEBI]
synonym: "gaseous molecular entity" RELATED [ChEBI]
xref: Wikipedia:https\://en.wikipedia.org/wiki/Gas
is_a: CHEBI:33579 ! main group molecular entity
[Term]
id: CHEBI:13941
name: carbamate
namespace: chebi_ontology
subset: 3_STAR
synonym: "Carbamat" RELATED [ChEBI]
synonym: "carbamate" EXACT [UniProt]
synonym: "carbamate" EXACT IUPAC_NAME [IUPAC]
synonym: "carbamate ion" RELATED [ChemIDplus]
synonym: "carbamic acid, ion(1-)" RELATED [ChemIDplus]
synonym: "Karbamat" RELATED [ChEBI]
xref: Beilstein:3903503 {source="Beilstein"}
xref: CAS:302-11-4 {source="ChemIDplus"}
xref: Gmelin:239604 {source="Gmelin"}
is_a: CHEBI:37022 ! amino-acid anion
relationship: is_conjugate_base_of CHEBI:28616 ! carbamic acid
property_value: http://purl.obolibrary.org/obo/chebi/charge "-1" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/formula "CH2NO2" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/CH3NO2/c2-1(3)4/h2H2,(H,3,4)/p-1" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/inchikey "KXDHJXZQYSOELW-UHFFFAOYSA-M" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/mass "60.03212" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "60.00910" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/smiles "NC([O-])=O" xsd:string
[Term]
id: CHEBI:15339
name: acceptor
namespace: chebi_ontology
alt_id: CHEBI:13699
alt_id: CHEBI:2377
def: "A molecular entity that can accept an electron, a pair of electrons, an atom or a group from another molecular entity." []
subset: 3_STAR
synonym: "A" RELATED [KEGG_COMPOUND]
synonym: "accepteur" RELATED [ChEBI]
synonym: "Acceptor" EXACT [KEGG_COMPOUND]
synonym: "Akzeptor" RELATED [ChEBI]
synonym: "Hydrogen-acceptor" RELATED [KEGG_COMPOUND]
synonym: "Oxidized donor" RELATED [KEGG_COMPOUND]
xref: KEGG:C00028
xref: KEGG:C16722
is_a: CHEBI:51086 ! chemical role
[Term]
id: CHEBI:15841
name: polypeptide
namespace: chebi_ontology
alt_id: CHEBI:14860
alt_id: CHEBI:8314
def: "A peptide containing ten or more amino acid residues." []
subset: 3_STAR
synonym: "polipeptido" RELATED [ChEBI]
synonym: "Polypeptid" RELATED [ChEBI]
synonym: "Polypeptide" EXACT [KEGG_COMPOUND]
synonym: "polypeptides" EXACT IUPAC_NAME [IUPAC]
xref: KEGG:C00403
is_a: CHEBI:16670 ! peptide
is_a: CHEBI:33839 ! macromolecule
property_value: http://purl.obolibrary.org/obo/chebi/formula "C4H6N2O3R2(C2H2NOR)n" xsd:string
[Term]
id: CHEBI:15986
name: polynucleotide
namespace: chebi_ontology
alt_id: CHEBI:13672
alt_id: CHEBI:14859
alt_id: CHEBI:8312
def: "A nucleobase-containing molecular entity with a polymeric structure comprised of a linear sequence of 13 or more nucleotide residues." []
subset: 3_STAR
synonym: "Polynucleotide" EXACT [KEGG_COMPOUND]
synonym: "polynucleotides" RELATED [ChEBI]
xref: KEGG:C00419
is_a: CHEBI:33695 ! information biomacromolecule
is_a: CHEBI:61120 ! nucleobase-containing molecular entity
relationship: has_part CHEBI:50319 ! nucleotide residue
property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/formula "(C5H8O6PR)n.C10H17O10PR2" xsd:string
[Term]
id: CHEBI:16134
name: ammonia
namespace: chebi_ontology
alt_id: CHEBI:13405
alt_id: CHEBI:13406
alt_id: CHEBI:13407
alt_id: CHEBI:13771
alt_id: CHEBI:22533
alt_id: CHEBI:44269
alt_id: CHEBI:44284
alt_id: CHEBI:44404
alt_id: CHEBI:7434
def: "An azane that consists of a single nitrogen atom covelently bonded to three hydrogen atoms." []
subset: 3_STAR
synonym: "[NH3]" RELATED [MolBase]
synonym: "AMMONIA" EXACT [PDBeChem]
synonym: "Ammonia" EXACT [KEGG_COMPOUND]
synonym: "ammonia" EXACT IUPAC_NAME [IUPAC]
synonym: "ammoniac" RELATED [ChEBI]
synonym: "Ammoniak" RELATED [ChemIDplus]
synonym: "amoniaco" RELATED [ChEBI]
synonym: "azane" EXACT IUPAC_NAME [IUPAC]
synonym: "NH3" RELATED [KEGG_COMPOUND]
synonym: "NH3" RELATED [UniProt]
synonym: "NH3" RELATED [IUPAC]
synonym: "R-717" RELATED [ChEBI]
synonym: "spirit of hartshorn" RELATED [ChemIDplus]
xref: Beilstein:3587154 {source="Beilstein"}
xref: CAS:7664-41-7 {source="ChemIDplus"}
xref: CAS:7664-41-7 {source="NIST Chemistry WebBook"}
xref: CAS:7664-41-7 {source="KEGG COMPOUND"}
xref: Drug_Central:4625 {source="DrugCentral"}
xref: Gmelin:79 {source="Gmelin"}
xref: HMDB:HMDB0000051
xref: KEGG:C00014
xref: KEGG:D02916
xref: KNApSAcK:C00007267
xref: MetaCyc:AMMONIA
xref: MolBase:930
xref: PDBeChem:NH3
xref: PMID:110589 {source="Europe PMC"}
xref: PMID:11139349 {source="Europe PMC"}
xref: PMID:11540049 {source="Europe PMC"}
xref: PMID:11746427 {source="Europe PMC"}
xref: PMID:11783653 {source="Europe PMC"}
xref: PMID:13753780 {source="Europe PMC"}
xref: PMID:14663195 {source="Europe PMC"}
xref: PMID:15092448 {source="Europe PMC"}
xref: PMID:15094021 {source="Europe PMC"}
xref: PMID:15554424 {source="Europe PMC"}
xref: PMID:15969015 {source="Europe PMC"}
xref: PMID:16008360 {source="Europe PMC"}
xref: PMID:16050680 {source="Europe PMC"}
xref: PMID:16348008 {source="Europe PMC"}
xref: PMID:16349403 {source="Europe PMC"}
xref: PMID:16614889 {source="Europe PMC"}
xref: PMID:16664306 {source="Europe PMC"}
xref: PMID:16842901 {source="Europe PMC"}
xref: PMID:17025297 {source="Europe PMC"}
xref: PMID:17439666 {source="Europe PMC"}
xref: PMID:17569513 {source="Europe PMC"}
xref: PMID:17737668 {source="Europe PMC"}
xref: PMID:18670398 {source="Europe PMC"}
xref: PMID:22002069 {source="Europe PMC"}
xref: PMID:22081570 {source="Europe PMC"}
xref: PMID:22088435 {source="Europe PMC"}
xref: PMID:22100291 {source="Europe PMC"}
xref: PMID:22130175 {source="Europe PMC"}
xref: PMID:22150211 {source="Europe PMC"}
xref: PMID:22240068 {source="Europe PMC"}
xref: PMID:22290316 {source="Europe PMC"}
xref: PMID:22342082 {source="Europe PMC"}
xref: PMID:22385337 {source="Europe PMC"}
xref: PMID:22443779 {source="Europe PMC"}
xref: PMID:22560242 {source="Europe PMC"}
xref: Reaxys:3587154 {source="Reaxys"}
xref: Wikipedia:Ammonia
is_a: CHEBI:138675 ! gas molecular entity
is_a: CHEBI:35107 ! azane
is_a: CHEBI:37176 ! mononuclear parent hydride
relationship: is_conjugate_acid_of CHEBI:29337 ! azanide
relationship: is_conjugate_base_of CHEBI:28938 ! ammonium
relationship: RO:0000087 CHEBI:50910 ! has role neurotoxin
relationship: RO:0000087 CHEBI:59740 ! has role nucleophilic reagent
relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite
relationship: RO:0000087 CHEBI:77941 ! has role EC 3.5.1.4 (amidase) inhibitor
relationship: RO:0000087 CHEBI:78433 ! has role refrigerant
property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/formula "H3N" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/H3N/h1H3" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/inchikey "QGZKDVFQNNGYKY-UHFFFAOYSA-N" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/mass "17.03056" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "17.02655" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/smiles "[H]N([H])[H]" xsd:string
[Term]
id: CHEBI:16541
name: protein polypeptide chain
namespace: chebi_ontology
alt_id: CHEBI:8526
def: "A naturally occurring polypeptide synthesized at the ribosome." []
subset: 3_STAR
synonym: "a protein" RELATED [UniProt]
synonym: "polypeptide chain" RELATED [ChEBI]
synonym: "Protein" RELATED [KEGG_COMPOUND]
synonym: "protein polypeptide chains" RELATED [ChEBI]
xref: KEGG:C00017
is_a: CHEBI:15841 ! polypeptide
relationship: has_part CHEBI:33700 ! proteinogenic amino-acid residue
[Term]
id: CHEBI:16670
name: peptide
namespace: chebi_ontology
alt_id: CHEBI:14753
alt_id: CHEBI:25906
alt_id: CHEBI:7990
def: "Amide derived from two or more amino carboxylic acid molecules (the same or different) by formation of a covalent bond from the carbonyl carbon of one to the nitrogen atom of another with formal loss of water. The term is usually applied to structures formed from alpha-amino acids, but it includes those derived from any amino carboxylic acid. X = OH, OR, NH2, NHR, etc." []
subset: 3_STAR
synonym: "Peptid" RELATED [ChEBI]
synonym: "Peptide" EXACT [KEGG_COMPOUND]
synonym: "peptides" EXACT IUPAC_NAME [IUPAC]
synonym: "peptido" RELATED [ChEBI]
synonym: "peptidos" RELATED [ChEBI]
xref: KEGG:C00012
is_a: CHEBI:37622 ! carboxamide
is_a: CHEBI:50047 ! organic amino compound
relationship: has_part CHEBI:33708 ! amino-acid residue
relationship: is_tautomer_of CHEBI:60466 ! peptide zwitterion
property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/formula "(C2H2NOR)nC2H3NOR" xsd:string
[Term]
id: CHEBI:17891
name: donor
namespace: chebi_ontology
alt_id: CHEBI:14202
alt_id: CHEBI:4697
def: "A molecular entity that can transfer (\"donate\") an electron, a pair of electrons, an atom or a group to another molecular entity." []
subset: 3_STAR
synonym: "Donator" RELATED [ChEBI]
synonym: "donneur" RELATED [ChEBI]
synonym: "Donor" EXACT [KEGG_COMPOUND]
xref: KEGG:C01351
is_a: CHEBI:51086 ! chemical role
[Term]
id: CHEBI:18282
name: nucleobase
namespace: chebi_ontology
alt_id: CHEBI:13873
alt_id: CHEBI:25598
alt_id: CHEBI:2995
def: "That part of DNA or RNA that may be involved in pairing." []
subset: 3_STAR
synonym: "Base" RELATED [KEGG_COMPOUND]
synonym: "nucleobases" RELATED [ChEBI]
xref: KEGG:C00701
xref: Wikipedia:Nucleobase
is_a: CHEBI:38101 ! organonitrogen heterocyclic compound
[Term]
id: CHEBI:22221
name: acyl group
namespace: chebi_ontology
def: "An organic group formed by removing one or more hydroxy groups from an oxoacid that has the general structure RkE(=O)l(OH)m (l =/= 0). Although the term is almost always applied to organic compounds, with carboxylic acid as the oxoacid, acyl groups can in principle be derived from other types of acids such as sulfonic acids or phosphonic acids." []
subset: 3_STAR
synonym: "acyl group" EXACT [IUPAC]
synonym: "acyl groups" RELATED [ChEBI]
synonym: "alkanoyl" EXACT IUPAC_NAME [IUPAC]
synonym: "alkanoyl group" RELATED [ChEBI]
synonym: "groupe acyle" RELATED [IUPAC]
is_a: CHEBI:33247 ! organic group
[Term]
id: CHEBI:22563
name: anion
namespace: chebi_ontology
def: "A monoatomic or polyatomic species having one or more elementary charges of the electron." []
subset: 3_STAR
synonym: "Anion" EXACT [ChEBI]
synonym: "anion" EXACT IUPAC_NAME [IUPAC]
synonym: "anion" EXACT [ChEBI]
synonym: "Anionen" RELATED [ChEBI]
synonym: "aniones" RELATED [ChEBI]
synonym: "anions" RELATED [IUPAC]
is_a: CHEBI:24870 ! ion
[Term]
id: CHEBI:22695
name: base
namespace: chebi_ontology
def: "A molecular entity having an available pair of electrons capable of forming a covalent bond with a hydron (Bronsted base) or with the vacant orbital of some other molecular entity (Lewis base)." []
subset: 3_STAR
synonym: "Base" EXACT [ChEBI]
synonym: "base" EXACT [ChEBI]
synonym: "base" EXACT IUPAC_NAME [IUPAC]
synonym: "Base1" RELATED [KEGG_COMPOUND]
synonym: "Base2" RELATED [KEGG_COMPOUND]
synonym: "Basen" RELATED [ChEBI]
synonym: "bases" RELATED [ChEBI]
synonym: "Nucleobase" RELATED [KEGG_COMPOUND]
xref: KEGG:C00701
is_a: CHEBI:51086 ! chemical role
[Term]
id: CHEBI:23004
name: carbamoyl group
namespace: chebi_ontology
def: "The univalent carboacyl group formed by loss of -OH from the carboxy group of carbamic acid." []
subset: 3_STAR
synonym: "-C(O)NH2" RELATED [ChEBI]
synonym: "-CONH2" RELATED [IUPAC]
synonym: "aminocarbonyl" RELATED [IUPAC]
synonym: "carbamoyl" EXACT IUPAC_NAME [IUPAC]
synonym: "carbamyl" RELATED [ChEBI]
synonym: "carbamyl group" RELATED [ChEBI]
synonym: "carboxamide" RELATED [IUPAC]
xref: PMID:24168430 {source="Europe PMC"}
is_a: CHEBI:27207 ! univalent carboacyl group
relationship: is_substituent_group_from CHEBI:28616 ! carbamic acid
property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/formula "CH2NO" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/mass "44.03272" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "44.01364" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/smiles "*C(N)=O" xsd:string
[Term]
id: CHEBI:23019
name: carbonyl group
namespace: chebi_ontology
subset: 3_STAR
synonym: ">C=O" RELATED [IUPAC]
synonym: "carbonyl" EXACT IUPAC_NAME [IUPAC]
synonym: "carbonyl group" EXACT [ChEBI]
synonym: "carbonyl group" EXACT [UniProt]
is_a: CHEBI:51422 ! organodiyl group
property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/formula "CO" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/mass "28.01010" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "27.99491" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/smiles "O=C(*)*" xsd:string
[Term]
id: CHEBI:23357
name: cofactor
namespace: chebi_ontology
def: "An organic molecule or ion (usually a metal ion) that is required by an enzyme for its activity. It may be attached either loosely (coenzyme) or tightly (prosthetic group)." []
subset: 3_STAR
synonym: "cofactor" EXACT [IUPAC]
synonym: "cofactors" EXACT IUPAC_NAME [IUPAC]
xref: Wikipedia:Cofactor_(biochemistry)
is_a: CHEBI:52206 ! biochemical role
[Term]
id: CHEBI:23367
name: molecular entity
namespace: chebi_ontology
def: "Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity." []
subset: 3_STAR
synonym: "entidad molecular" RELATED [IUPAC]
synonym: "entidades moleculares" RELATED [IUPAC]
synonym: "entite moleculaire" RELATED [IUPAC]
synonym: "molecular entities" RELATED [IUPAC]
synonym: "molecular entity" EXACT IUPAC_NAME [IUPAC]
synonym: "molekulare Entitaet" RELATED [ChEBI]
is_a: CHEBI:24431 ! chemical entity
[Term]
id: CHEBI:23924
name: enzyme inhibitor
namespace: chebi_ontology
def: "A compound or agent that combines with an enzyme in such a manner as to prevent the normal substrate-enzyme combination and the catalytic reaction." []
subset: 3_STAR
synonym: "enzyme inhibitor" EXACT IUPAC_NAME [IUPAC]
synonym: "enzyme inhibitors" RELATED [ChEBI]
synonym: "inhibidor enzimatico" RELATED [ChEBI]
synonym: "inhibidores enzimaticos" RELATED [ChEBI]
synonym: "inhibiteur enzymatique" RELATED [ChEBI]
synonym: "inhibiteurs enzymatiques" RELATED [ChEBI]
is_a: CHEBI:35222 ! inhibitor
is_a: CHEBI:52206 ! biochemical role
[Term]
id: CHEBI:24431
name: chemical entity
namespace: chebi_ontology
def: "A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances." []
subset: 3_STAR
synonym: "chemical entity" EXACT [UniProt]
is_a: BFO:0000040 ! material entity
[Term]
id: CHEBI:24432
name: biological role
namespace: chebi_ontology
def: "A role played by the molecular entity or part thereof within a biological context." []
subset: 3_STAR
synonym: "biological function" RELATED [ChEBI]
is_a: BFO:0000023 ! role
is_a: CHEBI:50906 ! role
[Term]
id: CHEBI:24433
name: group
namespace: chebi_ontology
def: "A defined linked collection of atoms or a single atom within a molecular entity." []
subset: 3_STAR
synonym: "group" EXACT IUPAC_NAME [IUPAC]
synonym: "groupe" RELATED [IUPAC]
synonym: "grupo" RELATED [IUPAC]
synonym: "grupos" RELATED [IUPAC]
synonym: "Gruppe" RELATED [ChEBI]
synonym: "Rest" RELATED [ChEBI]
is_a: CHEBI:24431 ! chemical entity
relationship: has_part CHEBI:33250 ! atom
[Term]
id: CHEBI:24532
name: organic heterocyclic compound
namespace: chebi_ontology
def: "A cyclic compound having as ring members atoms of carbon and at least of one other element." []
subset: 3_STAR
synonym: "organic heterocycle" RELATED [ChEBI]
synonym: "organic heterocyclic compounds" RELATED [ChEBI]
is_a: CHEBI:33285 ! heteroorganic entity
is_a: CHEBI:33832 ! organic cyclic compound
is_a: CHEBI:5686 ! heterocyclic compound
[Term]
id: CHEBI:24651
name: hydroxides
namespace: chebi_ontology
def: "Hydroxides are chemical compounds containing a hydroxy group or salts containing hydroxide (OH(-))." []
subset: 3_STAR
is_a: CHEBI:25806 ! oxygen molecular entity
is_a: CHEBI:33608 ! hydrogen molecular entity
is_a: CHEBI:37577 ! heteroatomic molecular entity
relationship: has_part CHEBI:43176 ! hydroxy group
[Term]
id: CHEBI:24833
name: oxoacid
namespace: chebi_ontology
def: "A compound which contains oxygen, at least one other element, and at least one hydrogen bound to oxygen, and which produces a conjugate base by loss of positive hydrogen ion(s) (hydrons)." []
subset: 3_STAR
synonym: "oxacids" RELATED [ChEBI]
synonym: "oxiacids" RELATED [ChEBI]
synonym: "oxo acid" RELATED [ChEBI]
synonym: "oxoacid" EXACT IUPAC_NAME [IUPAC]
synonym: "oxoacids" EXACT IUPAC_NAME [IUPAC]
synonym: "oxy-acids" RELATED [ChEBI]
synonym: "oxyacids" RELATED [ChEBI]
is_a: CHEBI:24651 ! hydroxides
relationship: RO:0000087 CHEBI:39141 ! has role Bronsted acid
[Term]
id: CHEBI:24834
name: inorganic anion
namespace: chebi_ontology
subset: 3_STAR
synonym: "inorganic anions" RELATED [ChEBI]
is_a: CHEBI:22563 ! anion
is_a: CHEBI:36914 ! inorganic ion
[Term]
id: CHEBI:24835
name: inorganic molecular entity
namespace: chebi_ontology
def: "A molecular entity that contains no carbon." []
subset: 3_STAR
synonym: "anorganische Verbindungen" RELATED [ChEBI]
synonym: "inorganic compounds" RELATED [ChEBI]
synonym: "inorganic entity" RELATED [ChEBI]
synonym: "inorganic molecular entities" RELATED [ChEBI]
synonym: "inorganics" RELATED [ChEBI]
is_a: CHEBI:23367 ! molecular entity
[Term]
id: CHEBI:24870
name: ion
namespace: chebi_ontology
def: "A molecular entity having a net electric charge." []
subset: 3_STAR
synonym: "Ion" EXACT [ChEBI]
synonym: "ion" EXACT IUPAC_NAME [IUPAC]
synonym: "ion" EXACT [ChEBI]
synonym: "Ionen" RELATED [ChEBI]
synonym: "iones" RELATED [ChEBI]
synonym: "ions" RELATED [ChEBI]
is_a: CHEBI:23367 ! molecular entity
[Term]
id: CHEBI:25212
name: metabolite
namespace: chebi_ontology
alt_id: CHEBI:26619
alt_id: CHEBI:35220
def: "Any intermediate or product resulting from metabolism. The term 'metabolite' subsumes the classes commonly known as primary and secondary metabolites." []
subset: 3_STAR
synonym: "metabolite" EXACT IUPAC_NAME [IUPAC]
synonym: "metabolites" RELATED [ChEBI]
synonym: "primary metabolites" RELATED [ChEBI]
synonym: "secondary metabolites" RELATED [ChEBI]
is_a: CHEBI:52206 ! biochemical role
[Term]
id: CHEBI:25367
name: molecule
namespace: chebi_ontology
def: "Any polyatomic entity that is an electrically neutral entity consisting of more than one atom." []
subset: 3_STAR
synonym: "molecula" RELATED [IUPAC]
synonym: "molecule" EXACT [IUPAC]
synonym: "molecules" RELATED [IUPAC]
synonym: "Molekuel" RELATED [ChEBI]
synonym: "neutral molecular compounds" RELATED [IUPAC]
is_a: CHEBI:36357 ! polyatomic entity
[Term]
id: CHEBI:25555
name: nitrogen atom
namespace: chebi_ontology
subset: 3_STAR
synonym: "7N" RELATED [IUPAC]
synonym: "azote" RELATED [IUPAC]
synonym: "N" RELATED [IUPAC]
synonym: "nitrogen" EXACT IUPAC_NAME [IUPAC]
synonym: "nitrogen" RELATED [ChEBI]
synonym: "nitrogeno" RELATED [ChEBI]
synonym: "Stickstoff" RELATED [ChEBI]
xref: WebElements:N
is_a: CHEBI:25585 ! nonmetal atom
is_a: CHEBI:33300 ! pnictogen
relationship: RO:0000087 CHEBI:33937 ! has role macronutrient
property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/formula "N" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/mass "14.007" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "14.00307" xsd:string
[Term]
id: CHEBI:25585
name: nonmetal atom
namespace: chebi_ontology
subset: 3_STAR
synonym: "Nichtmetall" RELATED [ChEBI]
synonym: "Nichtmetalle" RELATED [ChEBI]
synonym: "no metal" RELATED [ChEBI]
synonym: "no metales" RELATED [ChEBI]
synonym: "non-metal" RELATED [ChEBI]
synonym: "non-metaux" RELATED [ChEBI]
synonym: "nonmetal" EXACT IUPAC_NAME [IUPAC]
synonym: "nonmetal" RELATED [ChEBI]
synonym: "nonmetals" RELATED [ChEBI]
is_a: CHEBI:33250 ! atom
[Term]
id: CHEBI:25696
name: organic anion
namespace: chebi_ontology
def: "Any organic ion with a net negative charge." []
subset: 3_STAR
synonym: "organic anions" RELATED [ChEBI]
is_a: CHEBI:22563 ! anion
is_a: CHEBI:25699 ! organic ion
[Term]
id: CHEBI:25699
name: organic ion
namespace: chebi_ontology
subset: 3_STAR
synonym: "organic ions" RELATED [ChEBI]
is_a: CHEBI:24870 ! ion
is_a: CHEBI:50860 ! organic molecular entity
[Term]
id: CHEBI:25741
name: oxide
namespace: chebi_ontology
def: "An oxide is a chemical compound of oxygen with other chemical elements." []
subset: 3_STAR
synonym: "oxide" EXACT [ChEBI]
synonym: "oxides" RELATED [ChEBI]
is_a: CHEBI:25806 ! oxygen molecular entity
is_a: CHEBI:37577 ! heteroatomic molecular entity
[Term]
id: CHEBI:25805
name: oxygen atom
namespace: chebi_ontology
subset: 3_STAR
synonym: "8O" RELATED [IUPAC]
synonym: "O" RELATED [IUPAC]
synonym: "oxigeno" RELATED [ChEBI]
synonym: "oxygen" EXACT IUPAC_NAME [IUPAC]
synonym: "oxygen" RELATED [ChEBI]
synonym: "oxygene" RELATED [ChEBI]
synonym: "Sauerstoff" RELATED [ChEBI]
xref: KEGG:C00007
xref: WebElements:O
is_a: CHEBI:25585 ! nonmetal atom
is_a: CHEBI:33303 ! chalcogen
relationship: RO:0000087 CHEBI:33937 ! has role macronutrient
property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/formula "O" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/O" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/inchikey "QVGXLLKOCUKJST-UHFFFAOYSA-N" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/mass "15.99940" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "15.99491" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/smiles "[O]" xsd:string
[Term]
id: CHEBI:25806
name: oxygen molecular entity
namespace: chebi_ontology
subset: 3_STAR
synonym: "oxygen molecular entities" RELATED [ChEBI]
synonym: "oxygen molecular entity" EXACT [ChEBI]
is_a: CHEBI:33304 ! chalcogen molecular entity
relationship: has_part CHEBI:25805 ! oxygen atom
[Term]
id: CHEBI:27207
name: univalent carboacyl group
namespace: chebi_ontology
def: "A univalent carboacyl group is a group formed by loss of OH from the carboxy group of a carboxylic acid." []
subset: 3_STAR
synonym: "univalent acyl group" RELATED [ChEBI]
synonym: "univalent carboacyl groups" RELATED [ChEBI]
synonym: "univalent carboxylic acyl groups" RELATED [ChEBI]
is_a: CHEBI:37838 ! carboacyl group
[Term]
id: CHEBI:27369
name: zwitterion
namespace: chebi_ontology
def: "A neutral compound having formal unit electrical charges of opposite sign on non-adjacent atoms. Sometimes referred to as inner salts, dipolar ions (a misnomer)." []
subset: 3_STAR
synonym: "compose zwitterionique" RELATED [IUPAC]
synonym: "compuestos zwitterionicos" RELATED [IUPAC]
synonym: "zwitterion" EXACT IUPAC_NAME [IUPAC]
synonym: "zwitteriones" RELATED [IUPAC]
synonym: "zwitterionic compounds" RELATED [IUPAC]
synonym: "zwitterions" EXACT IUPAC_NAME [IUPAC]
is_a: CHEBI:51151 ! dipolar compound
[Term]
id: CHEBI:27594
name: carbon atom
namespace: chebi_ontology
alt_id: CHEBI:23009
alt_id: CHEBI:3399
subset: 3_STAR
synonym: "6C" RELATED [IUPAC]
synonym: "C" RELATED [KEGG_COMPOUND]
synonym: "C" RELATED [IUPAC]
synonym: "Carbon" RELATED [KEGG_COMPOUND]
synonym: "carbon" EXACT IUPAC_NAME [IUPAC]
synonym: "carbon" RELATED [ChEBI]
synonym: "carbone" RELATED [ChEBI]
synonym: "carbonium" RELATED [ChEBI]
synonym: "carbono" RELATED [ChEBI]
synonym: "Kohlenstoff" RELATED [ChEBI]
xref: CAS:7440-44-0 {source="ChemIDplus"}
xref: CAS:7440-44-0 {source="KEGG COMPOUND"}
xref: KEGG:C06265
xref: WebElements:C
is_a: CHEBI:25585 ! nonmetal atom
is_a: CHEBI:33306 ! carbon group element atom
relationship: RO:0000087 CHEBI:33937 ! has role macronutrient
property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/formula "C" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/C" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/inchikey "OKTJSMMVPCPJKN-UHFFFAOYSA-N" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/mass "12.01070" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "12.00000" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/smiles "[C]" xsd:string
[Term]
id: CHEBI:28616
name: carbamic acid
namespace: chebi_ontology
alt_id: CHEBI:22504
alt_id: CHEBI:23002
alt_id: CHEBI:3386
alt_id: CHEBI:44573
def: "A one-carbon compound that is ammonia in which one of the hydrogens is replaced by a carboxy group. Although carbamic acid derivatives are common, carbamic acid itself has never been synthesised." []
subset: 3_STAR
synonym: "Aminoameisensaeure" RELATED [ChEBI]
synonym: "Aminoformic acid" RELATED [KEGG_COMPOUND]
synonym: "Carbamate" RELATED [KEGG_COMPOUND]
synonym: "CARBAMIC ACID" EXACT [PDBeChem]
synonym: "Carbamic acid" EXACT [KEGG_COMPOUND]
synonym: "carbamic acid" EXACT IUPAC_NAME [IUPAC]
synonym: "Carbamidsaeure" RELATED [ChEBI]
xref: Beilstein:1734754 {source="Beilstein"}
xref: CAS:463-77-4 {source="KEGG COMPOUND"}
xref: CAS:463-77-4 {source="ChemIDplus"}
xref: DrugBank:DB04261
xref: Gmelin:130345 {source="Gmelin"}
xref: KEGG:C01563
xref: PDBeChem:OUT
xref: Wikipedia:Carbamic_acid
is_a: CHEBI:35352 ! organonitrogen compound
is_a: CHEBI:35605 ! carbon oxoacid
is_a: CHEBI:64708 ! one-carbon compound
relationship: is_conjugate_acid_of CHEBI:13941 ! carbamate
relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite
property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/formula "CH3NO2" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/CH3NO2/c2-1(3)4/h2H2,(H,3,4)" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/inchikey "KXDHJXZQYSOELW-UHFFFAOYSA-N" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/mass "61.04006" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "61.01638" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/smiles "NC(O)=O" xsd:string
[Term]
id: CHEBI:28938
name: ammonium
namespace: chebi_ontology
alt_id: CHEBI:22534
alt_id: CHEBI:49783
alt_id: CHEBI:7435
def: "An onium cation obtained by protonation of ammonia." []
subset: 3_STAR
synonym: "[NH4](+)" RELATED [MolBase]
synonym: "ammonium" EXACT IUPAC_NAME [IUPAC]
synonym: "ammonium" EXACT [ChEBI]
synonym: "ammonium cation" RELATED [ChemIDplus]
synonym: "ammonium ion" RELATED [PDBeChem]
synonym: "Ammonium(1+)" RELATED [ChemIDplus]
synonym: "azanium" EXACT IUPAC_NAME [IUPAC]
synonym: "NH4(+)" RELATED [UniProt]
synonym: "NH4(+)" RELATED [IUPAC]
synonym: "NH4+" RELATED [KEGG_COMPOUND]
xref: CAS:14798-03-9 {source="NIST Chemistry WebBook"}
xref: CAS:14798-03-9 {source="ChemIDplus"}
xref: Gmelin:84 {source="Gmelin"}
xref: KEGG:C01342
xref: MetaCyc:AMMONIUM
xref: MolBase:929
xref: PDBeChem:NH4
xref: PMID:11319011 {source="Europe PMC"}
xref: PMID:11341317 {source="Europe PMC"}
xref: PMID:12096804 {source="Europe PMC"}
xref: PMID:14512268 {source="Europe PMC"}
xref: PMID:14879753 {source="Europe PMC"}
xref: PMID:16345391 {source="Europe PMC"}
xref: PMID:16903292 {source="Europe PMC"}
xref: PMID:17392693 {source="Europe PMC"}
xref: PMID:18515490 {source="Europe PMC"}
xref: PMID:19199063 {source="Europe PMC"}
xref: PMID:19596600 {source="Europe PMC"}
xref: PMID:19682559 {source="Europe PMC"}
xref: PMID:19716251 {source="Europe PMC"}
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xref: Reaxys:16093784 {source="Reaxys"}
xref: Wikipedia:Ammonium
is_a: CHEBI:35106 ! nitrogen hydride
is_a: CHEBI:50313 ! onium cation
is_a: CHEBI:60242 ! monovalent inorganic cation
relationship: is_conjugate_acid_of CHEBI:16134 ! ammonia
relationship: RO:0000087 CHEBI:23357 ! has role cofactor
relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite
relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite
relationship: RO:0000087 CHEBI:77746 ! has role human metabolite
property_value: http://purl.obolibrary.org/obo/chebi/charge "+1" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/formula "H4N" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/H3N/h1H3/p+1" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/inchikey "QGZKDVFQNNGYKY-UHFFFAOYSA-O" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/mass "18.03850" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "18.03383" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/smiles "[H][N+]([H])([H])[H]" xsd:string
[Term]
id: CHEBI:29067
name: carboxylic acid anion
namespace: chebi_ontology
alt_id: CHEBI:13626
alt_id: CHEBI:13945
alt_id: CHEBI:23026
alt_id: CHEBI:58657
def: "The conjugate base formed when the carboxy group of a carboxylic acid is deprotonated." []
subset: 3_STAR
synonym: "a carboxylate" RELATED [UniProt]
synonym: "carboxylic acid anions" RELATED [ChEBI]
synonym: "carboxylic anions" RELATED [ChEBI]
is_a: CHEBI:25696 ! organic anion
is_a: CHEBI:35406 ! oxoanion
relationship: is_conjugate_base_of CHEBI:33575 ! carboxylic acid
property_value: http://purl.obolibrary.org/obo/chebi/charge "-1" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/formula "CO2R" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/mass "44.00950" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "43.98983" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/smiles "[O-]C([*])=O" xsd:string
[Term]
id: CHEBI:29337
name: azanide
namespace: chebi_ontology
subset: 3_STAR
synonym: "amide" EXACT IUPAC_NAME [IUPAC]
synonym: "azanide" EXACT IUPAC_NAME [IUPAC]
synonym: "dihydridonitrate(1-)" EXACT IUPAC_NAME [IUPAC]
synonym: "NH2(-)" RELATED [IUPAC]
is_a: CHEBI:35106 ! nitrogen hydride
is_a: CHEBI:79389 ! monovalent inorganic anion
relationship: is_conjugate_acid_of CHEBI:29340 ! hydridonitrate(2-)
relationship: is_conjugate_base_of CHEBI:16134 ! ammonia
property_value: http://purl.obolibrary.org/obo/chebi/charge "-1" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/formula "H2N" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/H2N/h1H2/q-1" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/inchikey "HYGWNUKOUCZBND-UHFFFAOYSA-N" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/mass "16.02262" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "16.01927" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/smiles "[H][N-][H]" xsd:string
[Term]
id: CHEBI:29340
name: hydridonitrate(2-)
namespace: chebi_ontology
def: "A divalent inorganic anion resulting from the removal of two protons from ammonia." []
subset: 3_STAR
synonym: "azanediide" EXACT IUPAC_NAME [IUPAC]
synonym: "hydridonitrate(2-)" EXACT IUPAC_NAME [IUPAC]
synonym: "imide" RELATED [IUPAC]
synonym: "NH(2-)" RELATED [IUPAC]
is_a: CHEBI:35106 ! nitrogen hydride
is_a: CHEBI:79388 ! divalent inorganic anion
relationship: is_conjugate_base_of CHEBI:29337 ! azanide
property_value: http://purl.obolibrary.org/obo/chebi/charge "-2" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/formula "HN" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/HN/h1H/q-2" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/inchikey "DZQYTNGKSBCIOE-UHFFFAOYSA-N" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/mass "15.01468" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "15.01200" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/smiles "[N--][H]" xsd:string
[Term]
id: CHEBI:32988
name: amide
namespace: chebi_ontology
alt_id: CHEBI:22473
alt_id: CHEBI:2633
def: "An amide is a derivative of an oxoacid RkE(=O)l(OH)m (l =/= 0) in which an acidic hydroxy group has been replaced by an amino or substituted amino group." []
subset: 3_STAR
synonym: "Amide" EXACT [KEGG_COMPOUND]
synonym: "amides" EXACT IUPAC_NAME [IUPAC]
xref: KEGG:C00241
is_a: CHEBI:51143 ! nitrogen molecular entity
[Term]
id: CHEBI:33232
name: application
namespace: chebi_ontology
def: "Intended use of the molecular entity or part thereof by humans." []
subset: 3_STAR
is_a: BFO:0000023 ! role
is_a: CHEBI:50906 ! role
[Term]
id: CHEBI:33233
name: fundamental particle
namespace: chebi_ontology