diff --git a/src/promptflow/promptflow/_sdk/operations/_local_storage_operations.py b/src/promptflow/promptflow/_sdk/operations/_local_storage_operations.py
index f9c916fcbe1..0dc6187c5c4 100644
--- a/src/promptflow/promptflow/_sdk/operations/_local_storage_operations.py
+++ b/src/promptflow/promptflow/_sdk/operations/_local_storage_operations.py
@@ -36,6 +36,7 @@
 from promptflow.contracts.run_info import RunInfo as NodeRunInfo
 from promptflow.contracts.run_info import Status
 from promptflow.contracts.run_mode import RunMode
+from promptflow.executor._result import LineResult
 from promptflow.executor.flow_executor import BulkResult
 from promptflow.storage import AbstractRunStorage
 
@@ -239,7 +240,14 @@ def load_io_spec(self) -> Tuple[Dict[str, Dict[str, str]], Dict[str, Dict[str, s
             flow_dag = yaml.safe_load(f)
         return flow_dag["inputs"], flow_dag["outputs"]
 
-    def dump_inputs(self, inputs: RunInputs) -> None:
+    def dump_inputs(self, line_results: List[LineResult]) -> None:
+        inputs = []
+        for line_result in line_results:
+            try:
+                inputs.append(line_result.run_info.inputs)
+            except Exception:
+                # ignore when single line doesn't have inputs
+                pass
         df = pd.DataFrame(inputs)
         with open(self._inputs_path, mode="w", encoding=DEFAULT_ENCODING) as f:
             # policy: http://policheck.azurewebsites.net/Pages/TermInfo.aspx?LCID=9&TermID=203588
@@ -389,6 +397,7 @@ def persist_result(self, result: Optional[BulkResult]) -> None:
             return
         self.dump_outputs(result.outputs)
         self.dump_metrics(result.metrics)
+        self.dump_inputs(result.line_results)
 
     @staticmethod
     def _prepare_folder(path: Union[str, Path]) -> Path:
diff --git a/src/promptflow/promptflow/_sdk/operations/_run_submitter.py b/src/promptflow/promptflow/_sdk/operations/_run_submitter.py
index c98b32666fa..14058fc938b 100644
--- a/src/promptflow/promptflow/_sdk/operations/_run_submitter.py
+++ b/src/promptflow/promptflow/_sdk/operations/_run_submitter.py
@@ -330,8 +330,7 @@ def _submit_bulk_run(self, flow: Flow, run: Run, local_storage: LocalStorageOper
             # persist snapshot and result
             # snapshot: flow directory and (mapped) inputs
             local_storage.dump_snapshot(flow)
-            local_storage.dump_inputs(mapped_inputs)
-            # result: outputs and metrics
+            # persist inputs, outputs and metrics
             local_storage.persist_result(bulk_result)
             # exceptions
             local_storage.dump_exception(exception=exception, bulk_results=bulk_result)
diff --git a/src/promptflow/tests/sdk_cli_test/e2etests/test_flow_run.py b/src/promptflow/tests/sdk_cli_test/e2etests/test_flow_run.py
index 2546edaf478..c5615510098 100644
--- a/src/promptflow/tests/sdk_cli_test/e2etests/test_flow_run.py
+++ b/src/promptflow/tests/sdk_cli_test/e2etests/test_flow_run.py
@@ -745,3 +745,33 @@ def test_system_metrics_in_properties(self, pf) -> None:
         assert FlowRunProperties.SYSTEM_METRICS in run.properties
         assert isinstance(run.properties[FlowRunProperties.SYSTEM_METRICS], dict)
         assert "total_tokens" in run.properties[FlowRunProperties.SYSTEM_METRICS]
+
+    def test_run_get_inputs(self, pf):
+        # inputs should be persisted when defaults are used
+        run = pf.run(
+            flow=f"{FLOWS_DIR}/default_input",
+            data=f"{DATAS_DIR}/webClassification1.jsonl",
+        )
+        inputs = pf.runs._get_inputs(run=run)
+        assert inputs == {"line_number": [0], "question": ["input value from default"]}
+
+        # inputs should be persisted when data value are used
+        run = pf.run(
+            flow=f"{FLOWS_DIR}/flow_with_dict_input",
+            data=f"{DATAS_DIR}/dictInput1.jsonl",
+        )
+        inputs = pf.runs._get_inputs(run=run)
+        assert inputs == {"key": [{"key": "value in data"}], "line_number": [0]}
+
+        # inputs should be persisted when column-mapping are used
+        run = pf.run(
+            flow=f"{FLOWS_DIR}/flow_with_dict_input",
+            data=f"{DATAS_DIR}/webClassification1.jsonl",
+            column_mapping={"key": {"value": "value in column-mapping"}, "url": "${data.url}"},
+        )
+        inputs = pf.runs._get_inputs(run=run)
+        assert inputs == {
+            "key": [{"value": "value in column-mapping"}],
+            "line_number": [0],
+            "url": ["https://www.youtube.com/watch?v=o5ZQyXaAv1g"],
+        }
diff --git a/src/promptflow/tests/test_configs/datas/dictInput1.jsonl b/src/promptflow/tests/test_configs/datas/dictInput1.jsonl
new file mode 100644
index 00000000000..4a9c0bcdbb7
--- /dev/null
+++ b/src/promptflow/tests/test_configs/datas/dictInput1.jsonl
@@ -0,0 +1 @@
+{"key": {"key": "value in data"}}