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[DRAFT] FLAIR#2 Dataset and Datamodule Integration #2394

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b96c78b
docs: update recommended strategy for models with input and output (i…
Sep 13, 2024
0ce9b78
fix: grammar and formatting
MathiasBaumgartinger Sep 13, 2024
d48acd7
fix: grammar
MathiasBaumgartinger Sep 13, 2024
8bafb95
Merge branch 'microsoft:main' into main
MathiasBaumgartinger Oct 29, 2024
431220d
feat/WIP: draft for data.py generation file for FLAIR2 dataset
Oct 29, 2024
c9d989d
fix/WIP: fix formatting conventions and populate directories for each…
Oct 29, 2024
8c16f69
fix/WIP: use alternative hashing algorithm for reproducibility and co…
Oct 29, 2024
3f7fec7
feat/WIP: draft for datasets and docs
Oct 30, 2024
7c4eaf9
refactor/WIP: mark TODOS, add some documentation
Nov 3, 2024
21e5b08
feat/WIP: first draft for test FLAIR2
Nov 3, 2024
541630f
feat: add FLAIR2 import to __init.py__
Nov 3, 2024
4c1602f
feat/WIP: adds sentinel 2 loading/plotting logic
Nov 3, 2024
da45219
Merge branch 'microsoft:main' into main
MathiasBaumgartinger Nov 3, 2024
4bdbe9a
feat/WIP: update flair2 unit tests
Nov 4, 2024
8d6d687
fix&refactor/WIP: provide correct download address for toy dataset an…
Nov 4, 2024
563f7f4
fix/WIP: properly crop sentinel 2 data
Nov 4, 2024
6aeff90
fix/WIP: update cropping slices to match the actual size, fix `_verif…
Nov 5, 2024
592c336
feat/WIP: add test data creation of sentinel files
Nov 5, 2024
6d3a189
fix: update tests for FLAIR2 dataset
Nov 5, 2024
9930f6a
feat: add dummy data for flair2
Nov 5, 2024
ddef891
fix: properly expose FLAIR2 dataet in __init__.py
Nov 5, 2024
63ddc2f
docs: update documentation of flair2 dataset
Nov 5, 2024
ed5ed59
feat: proper integrity checks using correct md5s
Nov 5, 2024
a5af101
feat: expose an option for using/not using sentinel data
Nov 5, 2024
6040cd1
feat: add flair2 datamodule
Nov 5, 2024
2704b3f
Merge branch 'microsoft:main' into main
MathiasBaumgartinger Nov 5, 2024
96a2207
feat: new dummy data
Nov 5, 2024
6e3301e
refactor: syntax for mypy and ruff
Nov 5, 2024
09d5fd6
fix: bug where sentinel data could be of dimension 0 in first T dimen…
Nov 5, 2024
3393953
feat: save md5s of newly created zips to txt
Nov 5, 2024
9fc77bc
fix: update md5s for test data
Nov 5, 2024
d68c377
Merge branch 'main' of https://github.com/MathiasBaumgartinger/torchgeo
Nov 5, 2024
5cbee8d
refactor: remove accidentally pushed test scene
Nov 5, 2024
196b090
refactor: fix ordering for ruff
Nov 5, 2024
1fe9b08
perf: reduce dummy data size
Nov 21, 2024
ffecc2d
docs: replace wrong class link
Nov 21, 2024
e29ba3d
docs: update versionadded 0.7
Nov 21, 2024
0194550
docs: add versionadded
Nov 21, 2024
f64cc40
refactor: add colormap as class member and restructure code
Nov 21, 2024
971f63d
fix: add a `self.` for newly defined member variable (undefined varia…
Nov 21, 2024
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5 changes: 5 additions & 0 deletions docs/api/datamodules.rst
Original file line number Diff line number Diff line change
Expand Up @@ -114,6 +114,11 @@ FireRisk

.. autoclass:: FireRiskDataModule

FLAIR2
^^^^^^

.. autoclass:: FLAIR2DataModule

GeoNRW
^^^^^^

Expand Down
5 changes: 5 additions & 0 deletions docs/api/datasets.rst
Original file line number Diff line number Diff line change
Expand Up @@ -297,6 +297,11 @@ FireRisk

.. autoclass:: FireRisk

FLAIR2
^^^^^^

.. autoclass:: FLAIR2

Forest Damage
^^^^^^^^^^^^^

Expand Down
126 changes: 64 additions & 62 deletions docs/api/datasets/non_geo_datasets.csv
Original file line number Diff line number Diff line change
@@ -1,62 +1,64 @@
Dataset,Task,Source,License,# Samples,# Classes,Size (px),Resolution (m),Bands
`ADVANCE`_,C,"Google Earth, Freesound","CC-BY-4.0","5,075",13,512x512,0.5,RGB
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something seems off here, since the entire csv file changed, and not just the FLAIR2 addition.

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Probably line endings

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Should I try to change to the original line endings, or does it not really matter?

`Benin Cashew Plantations`_,S,Airbus Pléiades,"CC-BY-4.0",70,6,"1,122x1,186",10,MSI
`BigEarthNet`_,C,Sentinel-1/2,"CDLA-Permissive-1.0","590,326",19--43,120x120,10,"SAR, MSI"
`BioMassters`_,R,Sentinel-1/2 and Lidar,"CC-BY-4.0",,,256x256, 10, "SAR, MSI"
`CaBuAr`_,CD,Sentinel-2,"OpenRAIL",424,2,512x512,20,MSI
`CaFFe`_,S,"Sentinel-1, TerraSAR-X, TanDEM-X, ENVISAT, ERS-1/2, ALOS PALSAR, and RADARSAT-1","CC-BY-4.0","19092","2 or 4","512x512",6-20,"SAR"
`ChaBuD`_,CD,Sentinel-2,"OpenRAIL",356,2,512x512,10,MSI
`Cloud Cover Detection`_,S,Sentinel-2,"CC-BY-4.0","22,728",2,512x512,10,MSI
`COWC`_,"C, R","CSUAV AFRL, ISPRS, LINZ, AGRC","AGPL-3.0-only","388,435",2,256x256,0.15,RGB
`CropHarvest`_,"C","Sentinel-1/2, SRTM, ERA5","CC-BY-SA-4.0","70,213",351,1x1,10,"SAR, MSI, SRTM"
`Kenya Crop Type`_,S,Sentinel-2,"CC-BY-SA-4.0","4,688",7,"3,035x2,016",10,MSI
`DeepGlobe Land Cover`_,S,DigitalGlobe +Vivid,-,803,7,"2,448x2,448",0.5,RGB
`DFC2022`_,S,Aerial,"CC-BY-4.0","3,981",15,"2,000x2,000",0.5,RGB
`Digital Typhoon`_,"C, R",Himawari,"CC-BY-4.0","189,364",8,512,5000,Infrared
`ETCI2021 Flood Detection`_,S,Sentinel-1,-,"66,810",2,256x256,5--20,SAR
`EuroSAT`_,C,Sentinel-2,"MIT","27,000",10,64x64,10,MSI
`FAIR1M`_,OD,Gaofen/Google Earth,"CC-BY-NC-SA-3.0","15,000",37,"1,024x1,024",0.3--0.8,RGB
`Fields Of The World`_,"S,I",Sentinel-2,"Various","70795","2,3",256x256,10,MSI
`FireRisk`_,C,NAIP Aerial,"CC-BY-NC-4.0","91,872",7,"320x320",1,RGB
`Forest Damage`_,OD,Drone imagery,"CDLA-Permissive-1.0","1,543",4,"1,500x1,500",,RGB
`GeoNRW`_,S,Aerial,"CC-BY-4.0","7,783",11,"1,000x1,000",1,"RGB, DEM"
`GID-15`_,S,Gaofen-2,-,150,15,"6,800x7,200",3,RGB
`IDTReeS`_,"OD,C",Aerial,"CC-BY-4.0",591,33,200x200,0.1--1,RGB
`Inria Aerial Image Labeling`_,S,Aerial,-,360,2,"5,000x5,000",0.3,RGB
`LandCover.ai`_,S,Aerial,"CC-BY-NC-SA-4.0","10,674",5,512x512,0.25--0.5,RGB
`LEVIR-CD`_,CD,Google Earth,-,637,2,"1,024x1,024",0.5,RGB
`LEVIR-CD+`_,CD,Google Earth,-,985,2,"1,024x1,024",0.5,RGB
`LoveDA`_,S,Google Earth,"CC-BY-NC-SA-4.0","5,987",7,"1,024x1,024",0.3,RGB
`MapInWild`_,S,"Sentinel-1/2, ESA WorldCover, NOAA VIIRS DNB","CC-BY-4.0",1018,1,1920x1920,10--463.83,"SAR, MSI, 2020_Map, avg_rad"
`Million-AID`_,C,Google Earth,-,1M,51--73,,0.5--153,RGB
`MMEarth`_,"C, S","Aster, Sentinel, ERA5","CC-BY-4.0","100K--1M",,"128x128 or 64x64",10,MSI
`NASA Marine Debris`_,OD,PlanetScope,"Apache-2.0",707,1,256x256,3,RGB
`OSCD`_,CD,Sentinel-2,"CC-BY-4.0",24,2,"40--1,180",60,MSI
`PASTIS`_,I,Sentinel-1/2,"CC-BY-4.0","2,433",19,128x128xT,10,MSI
`PatternNet`_,C,Google Earth,"CC-BY-4.0","30,400",38,256x256,0.06--5,RGB
`Potsdam`_,S,Aerial,-,38,6,"6,000x6,000",0.05,MSI
`QuakeSet`_,"C, R",Sentinel-1,"OpenRAIL","3,327",2,512x512,10,SAR
`ReforesTree`_,"OD, R",Aerial,"CC-BY-4.0",100,6,"4,000x4,000",0.02,RGB
`RESISC45`_,C,Google Earth,-,"31,500",45,256x256,0.2--30,RGB
`Rwanda Field Boundary`_,S,Planetscope,"NICFI AND CC-BY-4.0",70,2,256x256,4.7,RGB + NIR
`SatlasPretrain`_,"C, R, S, I, OD","NAIP, Landsat, Sentinel",ESA AND CC0-1.0 AND ODbL-1.0 AND CC-BY-4.0,302M,137,512,0.6--30,"SAR, MSI"
`Seasonal Contrast`_,T,Sentinel-2,"CC-BY-4.0",100K--1M,-,264x264,10,MSI
`SeasoNet`_,S,Sentinel-2,"CC-BY-4.0","1,759,830",33,120x120,10,MSI
`SEN12MS`_,S,"Sentinel-1/2, MODIS","CC-BY-4.0","180,662",33,256x256,10,"SAR, MSI"
`SKIPP'D`_,R,"Fish-eye","CC-BY-4.0","363,375",-,64x64,-,RGB
`SkyScript`_,IC,"NAIP, orthophotos, Planet SkySat, Sentinel-2, Landsat 8--9",MIT,5.2M,-,100--1000,0.1--30,RGB
`So2Sat`_,C,Sentinel-1/2,"CC-BY-4.0","400,673",17,32x32,10,"SAR, MSI"
`SpaceNet`_,I,WorldView-2/3 Planet Lab Dove,"CC-BY-SA-4.0","1,889--28,728",2,102--900,0.5--4,MSI
`SSL4EO`_-L,T,Landsat,"CC0-1.0",1M,-,264x264,30,MSI
`SSL4EO`_-S12,T,Sentinel-1/2,"CC-BY-4.0",1M,-,264x264,10,"SAR, MSI"
`SSL4EO-L Benchmark`_,S,Lansat & CDL,"CC0-1.0",25K,134,264x264,30,MSI
`SSL4EO-L Benchmark`_,S,Lansat & NLCD,"CC0-1.0",25K,17,264x264,30,MSI
`SustainBench Crop Yield`_,R,MODIS,"CC-BY-SA-4.0",11k,-,32x32,-,MSI
`Tropical Cyclone`_,R,GOES 8--16,"CC-BY-4.0","108,110",-,256x256,4K--8K,MSI
`UC Merced`_,C,USGS National Map,"public domain","2,100",21,256x256,0.3,RGB
`USAVars`_,R,NAIP Aerial,"CC-BY-4.0",100K,-,-,4,"RGB, NIR"
`Vaihingen`_,S,Aerial,-,33,6,"1,281--3,816",0.09,RGB
`VHR-10`_,I,"Google Earth, Vaihingen","MIT",800,10,"358--1,728",0.08--2,RGB
`Western USA Live Fuel Moisture`_,R,"Landsat8, Sentinel-1","CC-BY-NC-ND-4.0",2615,-,-,-,-
`xView2`_,CD,Maxar,"CC-BY-NC-SA-4.0","3,732",4,"1,024x1,024",0.8,RGB
`ZueriCrop`_,"I, T",Sentinel-2,-,116K,48,24x24,10,MSI
Dataset,Task,Source,License,# Samples,# Classes,Size (px),Resolution (m),Bands
`ADVANCE`_,C,"Google Earth, Freesound",CC-BY-4.0,"5,075",13,512x512,0.5,RGB
`Benin Cashew Plantations`_,S,Airbus Pléiades,CC-BY-4.0,70,6,"1,122x1,186",10,MSI
`BigEarthNet`_,C,Sentinel-1/2,CDLA-Permissive-1.0,"590,326",19--43,120x120,10,"SAR, MSI"
`BioMassters`_,R,Sentinel-1/2 and Lidar,CC-BY-4.0,,,256x256,10," ""SAR"," MSI"""
`CaBuAr`_,CD,Sentinel-2,OpenRAIL,424,2,512x512,20,MSI,
`CaFFe`_,S,"Sentinel-1, TerraSAR-X, TanDEM-X, ENVISAT, ERS-1/2, ALOS PALSAR, and RADARSAT-1",CC-BY-4.0,19092,2 or 4,512x512,6-20,SAR,
`ChaBuD`_,CD,Sentinel-2,OpenRAIL,356,2,512x512,10,MSI,
`Cloud Cover Detection`_,S,Sentinel-2,CC-BY-4.0,"22,728",2,512x512,10,MSI,
`COWC`_,"C, R","CSUAV AFRL, ISPRS, LINZ, AGRC",AGPL-3.0-only,"388,435",2,256x256,0.15,RGB,
`CropHarvest`_,C,"Sentinel-1/2, SRTM, ERA5",CC-BY-SA-4.0,"70,213",351,1x1,10,"SAR, MSI, SRTM",
`Kenya Crop Type`_,S,Sentinel-2,CC-BY-SA-4.0,"4,688",7,"3,035x2,016",10,MSI,
`DeepGlobe Land Cover`_,S,DigitalGlobe +Vivid,-,803,7,"2,448x2,448",0.5,RGB,
`DFC2022`_,S,Aerial,CC-BY-4.0,"3,981",15,"2,000x2,000",0.5,RGB,
`Digital Typhoon`_,"C, R",Himawari,CC-BY-4.0,"189,364",8,512,5000,Infrared,
`ETCI2021 Flood Detection`_,S,Sentinel-1,-,"66,810",2,256x256,5--20,SAR,
`EuroSAT`_,C,Sentinel-2,MIT,"27,000",10,64x64,10,MSI,
`FAIR1M`_,OD,Gaofen/Google Earth,CC-BY-NC-SA-3.0,"15,000",37,"1,024x1,024",0.3--0.8,RGB,
`Fields Of The World`_,"S,I",Sentinel-2,Various,70795,"2,3",256x256,10,MSI,
`FireRisk`_,C,NAIP Aerial,CC-BY-NC-4.0,"91,872",7,320x320,1,RGB,
`FLAIR2`_,S,"IGN, Sentinel-2",OPENLICENSE-2.0,7741,13--18,512x512,0.2--20,"RGB+NIR+NDSM, MSI",
`Forest Damage`_,OD,Drone imagery,CDLA-Permissive-1.0,"1,543",4,"1,500x1,500",,RGB,
`GeoNRW`_,S,Aerial,CC-BY-4.0,"7,783",11,"1,000x1,000",1,"RGB, DEM",
`GID-15`_,S,Gaofen-2,-,150,15,"6,800x7,200",3,RGB,
`IDTReeS`_,"OD,C",Aerial,CC-BY-4.0,591,33,200x200,0.1--1,RGB,
`Inria Aerial Image Labeling`_,S,Aerial,-,360,2,"5,000x5,000",0.3,RGB,
`LandCover.ai`_,S,Aerial,CC-BY-NC-SA-4.0,"10,674",5,512x512,0.25--0.5,RGB,
`LEVIR-CD`_,CD,Google Earth,-,637,2,"1,024x1,024",0.5,RGB,
`LEVIR-CD+`_,CD,Google Earth,-,985,2,"1,024x1,024",0.5,RGB,
`LoveDA`_,S,Google Earth,CC-BY-NC-SA-4.0,"5,987",7,"1,024x1,024",0.3,RGB,
`MapInWild`_,S,"Sentinel-1/2, ESA WorldCover, NOAA VIIRS DNB",CC-BY-4.0,1018,1,1920x1920,10--463.83,"SAR, MSI, 2020_Map, avg_rad",
`Million-AID`_,C,Google Earth,-,1M,51--73,,0.5--153,RGB,
`MMEarth`_,"C, S","Aster, Sentinel, ERA5",CC-BY-4.0,100K--1M,,128x128 or 64x64,10,MSI,
`NASA Marine Debris`_,OD,PlanetScope,Apache-2.0,707,1,256x256,3,RGB,
`OSCD`_,CD,Sentinel-2,CC-BY-4.0,24,2,"40--1,180",60,MSI,
`PASTIS`_,I,Sentinel-1/2,CC-BY-4.0,"2,433",19,128x128xT,10,MSI,
`PatternNet`_,C,Google Earth,CC-BY-4.0,"30,400",38,256x256,0.06--5,RGB,
`Potsdam`_,S,Aerial,-,38,6,"6,000x6,000",0.05,MSI,
`QuakeSet`_,"C, R",Sentinel-1,OpenRAIL,"3,327",2,512x512,10,SAR,
`ReforesTree`_,"OD, R",Aerial,CC-BY-4.0,100,6,"4,000x4,000",0.02,RGB,
`RESISC45`_,C,Google Earth,-,"31,500",45,256x256,0.2--30,RGB,
`Rwanda Field Boundary`_,S,Planetscope,NICFI AND CC-BY-4.0,70,2,256x256,4.7,RGB + NIR,
`SatlasPretrain`_,"C, R, S, I, OD","NAIP, Landsat, Sentinel",ESA AND CC0-1.0 AND ODbL-1.0 AND CC-BY-4.0,302M,137,512,0.6--30,"SAR, MSI",
`Seasonal Contrast`_,T,Sentinel-2,CC-BY-4.0,100K--1M,-,264x264,10,MSI,
`SeasoNet`_,S,Sentinel-2,CC-BY-4.0,"1,759,830",33,120x120,10,MSI,
`SEN12MS`_,S,"Sentinel-1/2, MODIS",CC-BY-4.0,"180,662",33,256x256,10,"SAR, MSI",
`SKIPP'D`_,R,Fish-eye,CC-BY-4.0,"363,375",-,64x64,-,RGB,
`SkyScript`_,IC,"NAIP, orthophotos, Planet SkySat, Sentinel-2, Landsat 8--9",MIT,5.2M,-,100--1000,0.1--30,RGB,
`So2Sat`_,C,Sentinel-1/2,CC-BY-4.0,"400,673",17,32x32,10,"SAR, MSI",
`SpaceNet`_,I,WorldView-2/3 Planet Lab Dove,CC-BY-SA-4.0,"1,889--28,728",2,102--900,0.5--4,MSI,
`SSL4EO`_-L,T,Landsat,CC0-1.0,1M,-,264x264,30,MSI,
`SSL4EO`_-S12,T,Sentinel-1/2,CC-BY-4.0,1M,-,264x264,10,"SAR, MSI",
`SSL4EO-L Benchmark`_,S,Lansat & CDL,CC0-1.0,25K,134,264x264,30,MSI,
`SSL4EO-L Benchmark`_,S,Lansat & NLCD,CC0-1.0,25K,17,264x264,30,MSI,
`SustainBench Crop Yield`_,R,MODIS,CC-BY-SA-4.0,11k,-,32x32,-,MSI,
`Tropical Cyclone`_,R,GOES 8--16,CC-BY-4.0,"108,110",-,256x256,4K--8K,MSI,
`UC Merced`_,C,USGS National Map,public domain,"2,100",21,256x256,0.3,RGB,
`USAVars`_,R,NAIP Aerial,CC-BY-4.0,100K,-,-,4,"RGB, NIR",
`Vaihingen`_,S,Aerial,-,33,6,"1,281--3,816",0.09,RGB,
`VHR-10`_,I,"Google Earth, Vaihingen",MIT,800,10,"358--1,728",0.08--2,RGB,
`Western USA Live Fuel Moisture`_,R,"Landsat8, Sentinel-1",CC-BY-NC-ND-4.0,2615,-,-,-,-,
`xView2`_,CD,Maxar,CC-BY-NC-SA-4.0,"3,732",4,"1,024x1,024",0.8,RGB,
`ZueriCrop`_,"I, T",Sentinel-2,-,116K,48,24x24,10,MSI,

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{"IMG_251399.tif": [256, 256], "IMG_392912.tif": [256, 256], "IMG_312814.tif": [256, 256], "IMG_865335.tif": [256, 256], "IMG_764580.tif": [256, 256], "IMG_468281.tif": [256, 256], "IMG_661075.tif": [256, 256], "IMG_367415.tif": [256, 256], "IMG_896910.tif": [256, 256], "IMG_329155.tif": [256, 256], "IMG_917180.tif": [256, 256], "IMG_949888.tif": [256, 256], "IMG_134194.tif": [256, 256], "IMG_919726.tif": [256, 256], "IMG_344107.tif": [256, 256], "IMG_449816.tif": [256, 256], "IMG_313940.tif": [256, 256], "IMG_979213.tif": [256, 256], "IMG_090196.tif": [256, 256], "IMG_336054.tif": [256, 256], "IMG_253290.tif": [256, 256], "IMG_553190.tif": [256, 256], "IMG_973658.tif": [256, 256], "IMG_176734.tif": [256, 256], "IMG_465542.tif": [256, 256], "IMG_854347.tif": [256, 256], "IMG_848674.tif": [256, 256], "IMG_917584.tif": [256, 256], "IMG_332051.tif": [256, 256], "IMG_713265.tif": [256, 256], "IMG_600560.tif": [256, 256], "IMG_833454.tif": [256, 256], "IMG_448930.tif": [256, 256], "IMG_537314.tif": [256, 256], "IMG_430048.tif": [256, 256], "IMG_016901.tif": [256, 256], "IMG_080149.tif": [256, 256], "IMG_363605.tif": [256, 256], "IMG_280596.tif": [256, 256], "IMG_384973.tif": [256, 256], "IMG_612894.tif": [256, 256], "IMG_489374.tif": [256, 256], "IMG_722482.tif": [256, 256], "IMG_107707.tif": [256, 256], "IMG_904282.tif": [256, 256]}
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S2A_MSIL2A_20210415T105021_N0300_R051_T31UDP_20210415T135921S2A_MSIL2A_20210415T105021_N0300_R051_T31UDP_20210415T135921S2A_MSIL2A_20210415T105021_N0300_R051_T31UDP_20210415T135921S2A_MSIL2A_20210415T105021_N0300_R051_T31UDP_20210415T135921S2A_MSIL2A_20210415T105021_N0300_R051_T31UDP_20210415T135921
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/home/landscapelab/Dev/torchgeo/tests/data/flair2/FLAIR2/flair-2_centroids_sp_to_patch.zip: af243a4c6ed95dd2b97d07261c7cc3dd
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/home/landscapelab/Dev/torchgeo/tests/data/flair2/FLAIR2/flair-2_centroids_sp_to_patch.json: d25e90af8a7bbe53df50ac3cb44c7600
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