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Publications

Publications

A list of the publications for the lab.

  • Bojar, D, Camacho, DM, Collins, JJ (2019), Using natural language processing to learn the grammar of glycans, Nature communications (submitted) [bioRxiv]
  • Valeri, J, Collins, KM, Lepe, BA, Lu, TK, Camacho, DM (2019), A convolutional neural network for interpretable prediction and redesign of toehold switches, Nature communications (submitted) [biorXiv]
  • Jalili-Firoozinezhad, S, Gazzaniga, FS, Calamari, EL, Camacho, DM, Fadel, C, Nestor, B, Cronce, MJ, Tovaglieri, A, Levy, O, Gregory, KE, Breault, DT, Cabral, JMS, Kasper, DL, Novak, R, Ingber, DE (2019), A complex human gut microbiome cultured in an anaerobic intestine-on-a-chip, Nature Biomedical Engineering, 3, 520-531 [PubMed]
  • Tovaglieri, A, Sontheimer-Phelps, A, Geirnaert, A, Prantil-Baun, R, Camacho, DM, Chou, DB, Jalili-Firoozinezhad, S, de Wouters, T, Kasendra, M, Super, M, Cartwright, M, Richmond, CA, Breault, DT, Lacroix, C, Ingber, DE (2019), Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites, Microbiome, 7, 43 [PubMed]
  • Camacho, DM, Collins, KM, Powers, RK, Costello, JC, Collins, JJ (2018), Next-generation machine learning for biological networks, Cell, 173, 1581-1592 [PubMed]
  • Musah, S, Dimitrakakis, N, Camacho, DM, Church, GM, Ingber, DE (2018), Directed differentiation of human induced pluripotent stem cells into mature kidney podocytes and establishment of a Glomerulus Chip, Nature Protocols, 13, 1662-1685 [PubMed]