fcgene.rb

require "formula"

class Fcgene < Formula
  homepage "http://sourceforge.net/projects/fcgene/"
  url "https://downloads.sourceforge.net/project/fcgene/fcgene-1.0.7.tar.gz"
  sha1 "15a1098170d60f7710acb7dbf40a8e6046130737"

  def install
    # upstream Makefile ignores $CXX
    ENV['AC_CXX'] = ENV['CXX']
    system "./configure", "--disable-debug",
                          "--disable-dependency-tracking",
                          "--disable-silent-rules",
                          "--prefix=#{prefix}"
    system "make"
    system "make", "install"
  end

  test do
    (testpath/"test.ped").write("1 1000000000 0 0 1 1 0 0 1 1\n1 1000000001 0 0 1 2 1 1 1 2\n")
    (testpath/"test.map").write("1 rs0 0 1000\n1 rs10 0 1001\n")
    system "#{bin}/fcgene", '--ped', 'test.ped', '--map', 'test.map'
  end
end