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.travis.yml
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# Control file for continuous integration testing at http://travis-ci.org/
language: cpp
dist: trusty
matrix:
include:
# works on Precise and Trusty
- os: linux
addons:
apt:
sources:
- ubuntu-toolchain-r-test
packages:
- g++-4.9
- pkg-config
- libncurses5-dev
- libncursesw5-dev
- zlib1g-dev
- libssl-dev
- liblz4-dev
- libcurl4-openssl-dev
- liblz-dev
- libbz2-dev
- liblzma-dev
env:
- MATRIX_EVAL="CC=gcc-4.9 && CXX=g++-4.9"
compiler: gcc
# works on Precise and Trusty
- os: linux
addons:
apt:
sources:
- ubuntu-toolchain-r-test
packages:
- g++-5
- pkg-config
- libncurses5-dev
- libncursesw5-dev
- zlib1g-dev
- libssl-dev
- liblz4-dev
- libcurl4-openssl-dev
- liblz-dev
- libbz2-dev
env:
- MATRIX_EVAL="CC=gcc-5 && CXX=g++-5"
compiler: gcc
# works on Precise and Trusty
- os: linux
addons:
apt:
sources:
- ubuntu-toolchain-r-test
packages:
- g++-6
- pkg-config
- libncurses5-dev
- libncursesw5-dev
- zlib1g-dev
- libssl-dev
- liblz4-dev
- libcurl4-openssl-dev
- liblz-dev
- libbz2-dev
env:
- MATRIX_EVAL="CC=gcc-6 && CXX=g++-6"
compiler: gcc
# works on Precise and Trusty
- os: linux
addons:
apt:
sources:
- ubuntu-toolchain-r-test
packages:
- g++-7
- pkg-config
- libncurses5-dev
- libncursesw5-dev
- zlib1g-dev
- libssl-dev
- liblz4-dev
- libcurl4-openssl-dev
- liblz-dev
- libbz2-dev
- liblzma-dev
env:
- MATRIX_EVAL="CC=gcc-7 && CXX=g++-7"
compiler: gcc
# works on Precise and Trusty
- os: linux
addons:
apt:
sources:
- ubuntu-toolchain-r-test
packages:
- g++-8
- pkg-config
- libncurses5-dev
- libncursesw5-dev
- zlib1g-dev
- libssl-dev
- liblz4-dev
- libcurl4-openssl-dev
- liblz-dev
- libbz2-dev
- liblzma-dev
env:
- MATRIX_EVAL="CC=gcc-8 && CXX=g++-8"
compiler: gcc
# works on Precise and Trusty
- os: linux
addons:
apt:
sources:
- ubuntu-toolchain-r-test
- llvm-toolchain-precise-3.6
packages:
- clang-3.6
- pkg-config
- libncurses5-dev
- libncursesw5-dev
- zlib1g-dev
- libssl-dev
- liblz4-dev
- libcurl4-openssl-dev
- liblz-dev
- libbz2-dev
env:
- MATRIX_EVAL="CC=clang-3.6 && CXX=clang++-3.6"
compiler: clang
# works on Precise and Trusty
- os: linux
addons:
apt:
sources:
- ubuntu-toolchain-r-test
- llvm-toolchain-precise-3.7
packages:
- clang-3.7
- pkg-config
- libncurses5-dev
- libncursesw5-dev
- zlib1g-dev
- libssl-dev
- liblz4-dev
- libcurl4-openssl-dev
- liblz-dev
- libbz2-dev
env:
- MATRIX_EVAL="CC=clang-3.7 && CXX=clang++-3.7"
compiler: clang
# works on Precise and Trusty
- os: linux
addons:
apt:
sources:
- ubuntu-toolchain-r-test
- llvm-toolchain-precise-3.8
packages:
- clang-3.8
- pkg-config
- libncurses5-dev
- libncursesw5-dev
- zlib1g-dev
- libssl-dev
- liblz4-dev
- libcurl4-openssl-dev
- liblz-dev
- libbz2-dev
env:
- MATRIX_EVAL="CC=clang-3.8 && CXX=clang++-3.8"
compiler: clang
# works on Trusty
- os: linux
addons:
apt:
sources:
- llvm-toolchain-trusty-3.9
packages:
- clang-3.9
- pkg-config
- libncurses5-dev
- libncursesw5-dev
- zlib1g-dev
- libssl-dev
- liblz4-dev
- libcurl4-openssl-dev
- liblz-dev
- libbz2-dev
env:
- MATRIX_EVAL="CC=clang-3.9 && CXX=clang++-3.9"
compiler: clang
# works on Trusty
- os: linux
addons:
apt:
sources:
- llvm-toolchain-trusty-4.0
packages:
- clang-4.0
- pkg-config
- libncurses5-dev
- libncursesw5-dev
- zlib1g-dev
- libssl-dev
- liblz4-dev
- libcurl4-openssl-dev
- liblz-dev
- libbz2-dev
env:
- MATRIX_EVAL="CC=clang-4.0 && CXX=clang++-4.0"
compiler: clang
# works on Trusty
- os: linux
addons:
apt:
sources:
- llvm-toolchain-trusty-5.0
packages:
- clang-5.0
- pkg-config
- libncurses5-dev
- libncursesw5-dev
- zlib1g-dev
- libssl-dev
- liblz4-dev
- libcurl4-openssl-dev
- liblz-dev
- libbz2-dev
env:
- MATRIX_EVAL="CC=clang-5.0 && CXX=clang++-5.0"
compiler: clang
# works on Trusty
- os: linux
addons:
apt:
sources:
- ubuntu-toolchain-r-test
- llvm-toolchain-trusty-6.0
packages:
- clang-6.0
- libstdc++-6-dev
- pkg-config
- libncurses5-dev
- libncursesw5-dev
- zlib1g-dev
- libssl-dev
- liblz4-dev
- libcurl4-openssl-dev
- liblz-dev
- libbz2-dev
- liblzma-dev
env:
- MATRIX_EVAL="CC=clang-6.0 && CXX=clang++-6.0"
compiler: clang
# works on Trusty
- os: linux
addons:
apt:
sources:
- ubuntu-toolchain-r-test
- llvm-toolchain-trusty-7
packages:
- clang-7
- libstdc++-7-dev
- pkg-config
- libncurses5-dev
- libncursesw5-dev
- zlib1g-dev
- libssl-dev
- liblz4-dev
- libcurl4-openssl-dev
- liblz-dev
- libbz2-dev
- liblzma-dev
env:
- MATRIX_EVAL="CC=clang-7 && CXX=clang++-7"
compiler: clang
# OSX begin
- os: osx
osx_image: xcode10
env:
- MATRIX_EVAL="brew update && brew install gcc@5 && CC=gcc-5 && CXX=g++-5"
- os: osx
osx_image: xcode10
env:
- MATRIX_EVAL="brew update && brew install gcc@6 && CC=gcc-6 && CXX=g++-6"
- os: osx
osx_image: xcode10
env:
- MATRIX_EVAL="brew update && brew install gcc@7 && CC=gcc-7 && CXX=g++-7"
- os: osx
osx_image: xcode10
env:
- MATRIX_EVAL="brew update && brew install gcc@8 && CC=gcc-8 && CXX=g++-8"
before_install:
- eval "${MATRIX_EVAL}"
- git clone https://github.com/facebook/zstd
- cd zstd && make -j4 && sudo make install && cd ..
- git clone https://github.com/samtools/htslib
- cd htslib && make && make lib-static && sudo make install && cd ..
script:
- git submodule update --recursive
- if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then make -j 4 2>/dev/null; fi
- if [[ "$TRAVIS_OS_NAME" != "osx" ]]; then make -j 4; fi