diff --git a/inst/rs-settings/rstudio-prefs--bio-default.json b/inst/rs-settings/rstudio-prefs--bio-default.json
index 9996c3f6..5e992228 100644
--- a/inst/rs-settings/rstudio-prefs--bio-default.json
+++ b/inst/rs-settings/rstudio-prefs--bio-default.json
@@ -13,8 +13,6 @@
     "auto_save_on_idle"                            : "backup",
     "background_diagnostics"                       : true,
     "background_diagnostics_delay_ms"              : 2000,
-    "bioconductor_mirror_name"                     : "Sweden (Umea) [https]",
-    "bioconductor_mirror_url"                      : "https://mirror.accum.se/mirror/bioconductor.org/",
     "blinking_cursor"                              : true,
     "busy_detection"                               : "always",
     "busy_exclusion_list"                          : ["tmux", "screen"],
@@ -40,7 +38,6 @@
     "console_suspend_blocked_notice_delay"         : 5,
     "continue_comments_on_newline"                 : true,
     "cpp_template"                                 : "Rcpp",
-    "cran_mirror"                                  : {},
     "custom_shell_command"                         : "",
     "custom_shell_options"                         : "",
     "data_viewer_max_cell_size"                    : 50,
@@ -48,7 +45,6 @@
     "default_encoding"                             : "UTF-8",
     "default_latex_program"                        : "pdfLaTeX",
     "default_project_location"                     : "~/R",
-    "default_r_version"                            : {},
     "default_sweave_engine"                        : "Sweave",
     "diagnostics_in_r_function_calls"              : true,
     "diagnostics_on_save"                          : true,
@@ -74,7 +70,6 @@
     "font_size_points"                             : 10,
     "full_project_path_in_window_title"            : false,
     "git_diff_ignore_whitespace"                   : false,
-    "git_exe_path"                                 : "",
     "global_theme"                                 : "default",
     "graphics_antialiasing"                        : "default",
     "graphics_backend"                             : "default",
@@ -114,17 +109,13 @@
     "new_proj_use_renv"                            : false,
     "num_spaces_for_tab"                           : 2,
     "packages_pane_enabled"                        : true,
-    "panes"                                        : {},
     "pdf_previewer"                                : "rstudio",
     "plumber_viewer_type"                          : "window",
     "posix_terminal_shell"                         : "default",
     "project_safe_startup_seconds"                 : 30,
     "publish_ca_bundle"                            : "",
     "publish_check_certificates"                   : true,
-    "python_path"                                  : "",
     "python_project_environment_automatic_activate": true,
-    "python_type"                                  : "",
-    "python_version"                               : "",
     "rainbow_fenced_divs"                          : true,
     "rainbow_parentheses"                          : true,
     "real_time_spellchecking"                      : true,
@@ -142,7 +133,6 @@
     "rmd_preferred_template_path"                  : "",
     "rmd_viewer_type"                              : "window",
     "root_document"                                : "",
-    "rsa_key_path"                                 : "",
     "run_rprofile_on_resume"                       : false,
     "save_before_sourcing"                         : true,
     "save_files_before_build"                      : true,
@@ -181,14 +171,10 @@
     "soft_wrap_rmd_files"                          : true,
     "sort_file_names_naturally"                    : true,
     "source_with_echo"                             : true,
-    "spelling_custom_dictionaries"                 : [],
-    "spelling_dictionary_language"                 : "en_US",
-    "ssh_key_type"                                 : "ed25519",
     "strip_trailing_whitespace"                    : true,
     "style_diagnostics"                            : true,
     "submit_crash_reports"                         : true,
     "surround_selection"                           : "quotes_and_brackets",
-    "svn_exe_path"                                 : "",
     "sync_files_pane_working_dir"                  : true,
     "syntax_color_console"                         : true,
     "tab_completion"                               : true,
@@ -196,6 +182,8 @@
     "tab_multiline_completion"                     : false,
     "terminal_bell_style"                          : "sound",
     "terminal_close_behavior"                      : "never",
+    "terminal_hooks"                               : true,
+    "terminal_ignored_environment_variables"       : [],
     "terminal_initial_directory"                   : "project",
     "terminal_local_echo"                          : true,
     "terminal_path"                                : "",
@@ -236,7 +224,6 @@
     "warn_if_no_such_variable_in_scope"            : true,
     "warn_variable_defined_but_not_used"           : true,
     "windows_terminal_shell"                       : "win-git-bash",
-    "wrap_tab_navigation"                          : true,
-    "zotero_libraries"                             : ["My Library"]
+    "wrap_tab_navigation"                          : true
 }