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Adding site tables (#211) creates side-effects for simulations where fixations are "pruned". The required operations should be abstracted out into a function in fwdpp::ts.
The text was updated successfully, but these errors were encountered:
Note for future self: we need a function to prune fixations from the tree sequences. There are two strategies one can envision:
Remove mutations that lead to all alive nodes and zero preserved nodes. This method removes a subset of fixations.
Remove all mutations that are on the root nodes of marginal trees with only 1 root. Without ancient samples, this accomplishes exactly what we want w/o the need for sample list updating.
Adding site tables (#211) creates side-effects for simulations where fixations are "pruned". The required operations should be abstracted out into a function in
fwdpp::ts
.The text was updated successfully, but these errors were encountered: