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using multiple --tumor-sample flags for create_inputs #112

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dtm2117 opened this issue Aug 6, 2019 · 0 comments
Open

using multiple --tumor-sample flags for create_inputs #112

dtm2117 opened this issue Aug 6, 2019 · 0 comments

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@dtm2117
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dtm2117 commented Aug 6, 2019

Hello,

When trying to run the creat_inputs script for a longitudinal sample, is there anyway to specify multiple tumor IDs so that the correct VCF columns are used? Mutect outputs the tumor/normal columns alphabetically(or numerically) ordered, so being able to designate the correct columns for multiple samples would be ideal.

Is this functionality already included?

best,
David

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