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multievolve completed successfully with the following message:
[2019-11-12 07:45:12] You may remove the following unneeded intermediate files: phylowgs/chain_2/trees.zip phylowgs/chain_3/trees.zip
[2019-11-12 07:45:12] To write JSON results, please run `python write_results.py run_name trees.zip run_name.summ.json.gz run_name.muts.json.gz run_name.mutass.zip`
However, when running this command I get the following error:
python write_results.py run_name trees.zip run_name.summ.json.gz run_name.muts.json.gz run_name.mutass.zip
starting ResultGenerator
reading file: trees.zip
Traceback (most recent call last):
File "write_results.py", line 60, in <module>
main()
File "write_results.py", line 45, in main
summaries, mutlist, mutass, params = ResultGenerator().generate(args.tree_file, args.include_ssm_names)
File "pwgsresults/result_generator.py", line 14, in generate
first_tree = next(reader.load_trees())
StopIteration
I tried stepping through the code, but can't pinpoint the issue.
the trees.zip has 5000 tree files along with:
params.json
cnv_logical_physical_mapping.json
Thanks for the help!
The text was updated successfully, but these errors were encountered:
multievolve completed successfully with the following message:
However, when running this command I get the following error:
I tried stepping through the code, but can't pinpoint the issue.
Thanks for the help!
The text was updated successfully, but these errors were encountered: