Fix docs a little

Author: moshi4

README.md

@@ -238,9 +238,9 @@ for seqid, size in gff.get_seqid2size().items():
     track = gv.add_feature_track(seqid, size, labelsize=15)
     track.add_sublabel(size=10, color="grey")
     cds_features = gff.get_seqid2features(feature_type="CDS")[seqid]
-    # CDS: blue, CDS(pseudo): lightgrey
+    # CDS: blue, CDS(pseudo): grey
     for cds_feature in cds_features:
-        color = "lightgrey" if is_pseudo_feature(cds_feature) else "blue"
+        color = "grey" if is_pseudo_feature(cds_feature) else "blue"
         track.add_features(cds_feature, color=color)
     # rRNA: lime
     rrna_features = gff.get_seqid2features(feature_type="rRNA")[seqid]

docs/index.md

@@ -6,6 +6,13 @@
 [![Latest PyPI version](https://img.shields.io/pypi/v/pygenomeviz.svg)](https://pypi.python.org/pypi/pygenomeviz)
 [![conda-forge](https://img.shields.io/conda/vn/conda-forge/pygenomeviz.svg?color=green)](https://anaconda.org/conda-forge/pygenomeviz)  
 
+!!! info "Major Version Upgrade v1.0.0"
+
+    A major version upgrade, pyGenomeViz **v1.0.0**, was released on 2024/05.
+    Backward incompatible changes have been made between v1.0.0 and v0.X.X to make for a more sophisticated API/CLI design.
+    Therefore, v0.X.X users should pin the version to v0.4.4 or update existing code for v1.0.0.
+    Previous v0.4.4 documentation is available [here](https://moshi4.github.io/docs/pygenomeviz/v0.4.4/).
+
 ## Overview
 
 pyGenomeViz is a genome visualization python package for comparative genomics implemented based on matplotlib.

notebooks/fastANI/README.md

@@ -10,9 +10,9 @@ Python script (`visualize.py`) that can plot the FastANI visual result using pyG
 
     pip install pygenomeviz
 
-**Install bioconda package:**
+**Install conda-forge package:**
 
-    conda install -c conda-forge -c bioconda pygenomeviz
+    conda install -c conda-forge pygenomeviz
 
 ## Usage