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OpenFOAM-v2012.patch
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OpenFOAM-v2012.patch
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.../DelaunayMesh/DelaunayMesh.C | 4 +-
.../DelaunayMesh/DistributedDelaunayMesh.C | 4 +-
.../CGALTriangulation3DKernel.H | 5 +++
.../indexedVertex/indexedVertex.H | 3 ++
.../surfaceBooleanFeatures.C | 3 ++
bin/tools/RunFunctions | 3 ++
bin/tools/lib-dir | 8 ++--
etc/config.csh/functions | 8 +++-
etc/config.csh/mac/paraview | 13 ++++++
etc/config.csh/paraview | 21 ++++++++--
etc/config.csh/setup | 45 ++++++++++++++++++---
etc/config.csh/unset | 22 ++++++++--
etc/config.sh/CGAL | 4 +-
etc/config.sh/FFTW | 2 +-
etc/config.sh/adios2 | 4 +-
etc/config.sh/ccmio | 2 +-
etc/config.sh/functions | 3 +-
etc/config.sh/gperftools | 2 +-
etc/config.sh/hypre | 2 +-
etc/config.sh/kahip | 2 +-
etc/config.sh/mac/paraview | 18 +++++++++
etc/config.sh/metis | 2 +-
etc/config.sh/mgridgen | 4 +-
etc/config.sh/petsc | 4 +-
etc/config.sh/scotch | 2 +-
etc/config.sh/setup | 47 ++++++++++++++++++----
etc/config.sh/unset | 25 ++++++++++--
etc/config.sh/vtk | 10 ++---
.../JohnsonJacksonParticleSlipFvPatchVectorField.C | 1 -
.../avalanche/src/avalanche/gistools/shapefile.C | 3 ++
src/OpenFOAM/containers/Lists/UList/UList.C | 5 ++-
.../searchableSphere/searchableSphere.C | 3 ++
src/renumber/SloanRenumber/SloanRenumber.C | 3 ++
wmake/rules/darwin64Clang/c | 2 +
wmake/rules/darwin64Clang/c++ | 2 +
wmake/rules/darwin64Clang/cgal | 5 +--
wmake/scripts/have_adios2 | 24 +++++------
wmake/scripts/have_mgridgen | 10 +++--
38 files changed, 255 insertions(+), 75 deletions(-)
diff --git a/applications/utilities/mesh/generation/foamyMesh/conformalVoronoiMesh/DelaunayMesh/DelaunayMesh.C b/applications/utilities/mesh/generation/foamyMesh/conformalVoronoiMesh/DelaunayMesh/DelaunayMesh.C
index 9ae95d5d..211c5fc5 100644
--- a/applications/utilities/mesh/generation/foamyMesh/conformalVoronoiMesh/DelaunayMesh/DelaunayMesh.C
+++ b/applications/utilities/mesh/generation/foamyMesh/conformalVoronoiMesh/DelaunayMesh/DelaunayMesh.C
@@ -304,7 +304,9 @@ Foam::Map<Foam::label> Foam::DelaunayMesh<Triangulation>::rangeInsertWithInfo
);
}
- std::random_shuffle(points.begin(), points.end());
+ std::random_device rd;
+ std::mt19937 g(rd());
+ std::shuffle(points.begin(), points.end(), g);
spatial_sort
(
diff --git a/applications/utilities/mesh/generation/foamyMesh/conformalVoronoiMesh/DelaunayMesh/DistributedDelaunayMesh.C b/applications/utilities/mesh/generation/foamyMesh/conformalVoronoiMesh/DelaunayMesh/DistributedDelaunayMesh.C
index 56b18a89..3b3d96d1 100644
--- a/applications/utilities/mesh/generation/foamyMesh/conformalVoronoiMesh/DelaunayMesh/DistributedDelaunayMesh.C
+++ b/applications/utilities/mesh/generation/foamyMesh/conformalVoronoiMesh/DelaunayMesh/DistributedDelaunayMesh.C
@@ -880,7 +880,9 @@ Foam::DistributedDelaunayMesh<Triangulation>::rangeInsertReferredWithInfo
);
}
- std::random_shuffle(pointsBbDistSqr.begin(), pointsBbDistSqr.end());
+ std::random_device rd;
+ std::mt19937 g(rd());
+ std::shuffle(pointsBbDistSqr.begin(), pointsBbDistSqr.end(), g);
// Sort in ascending order by the distance of the point from the centre
// of the processor bounding box
diff --git a/applications/utilities/mesh/generation/foamyMesh/conformalVoronoiMesh/conformalVoronoiMesh/CGALTriangulation3DKernel.H b/applications/utilities/mesh/generation/foamyMesh/conformalVoronoiMesh/conformalVoronoiMesh/CGALTriangulation3DKernel.H
index 277bd836..9dfe234d 100644
--- a/applications/utilities/mesh/generation/foamyMesh/conformalVoronoiMesh/conformalVoronoiMesh/CGALTriangulation3DKernel.H
+++ b/applications/utilities/mesh/generation/foamyMesh/conformalVoronoiMesh/conformalVoronoiMesh/CGALTriangulation3DKernel.H
@@ -35,6 +35,9 @@ Description
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+#pragma clang diagnostic push
+#pragma clang diagnostic ignored "-W#pragma-messages"
+
#include "CGAL/Delaunay_triangulation_3.h"
#ifdef CGAL_INEXACT
@@ -62,6 +65,8 @@ Description
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+#pragma clang diagnostic pop
+
#endif
// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/foamyMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedVertex/indexedVertex.H b/applications/utilities/mesh/generation/foamyMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedVertex/indexedVertex.H
index 22271ebe..c53bb14c 100644
--- a/applications/utilities/mesh/generation/foamyMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedVertex/indexedVertex.H
+++ b/applications/utilities/mesh/generation/foamyMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedVertex/indexedVertex.H
@@ -40,7 +40,10 @@ SourceFiles
#ifndef indexedVertex_H
#define indexedVertex_H
+#pragma clang diagnostic push
+#pragma clang diagnostic ignored "-W#pragma-messages"
#include "CGAL/Triangulation_3.h"
+#pragma clang diagnostic pop
#include "CGALTriangulation3DKernel.H"
#include "tensor.H"
#include "triad.H"
diff --git a/applications/utilities/surface/surfaceBooleanFeatures/surfaceBooleanFeatures.C b/applications/utilities/surface/surfaceBooleanFeatures/surfaceBooleanFeatures.C
index 174ae436..8ca5a13f 100644
--- a/applications/utilities/surface/surfaceBooleanFeatures/surfaceBooleanFeatures.C
+++ b/applications/utilities/surface/surfaceBooleanFeatures/surfaceBooleanFeatures.C
@@ -91,7 +91,10 @@ Description
#ifndef NO_CGAL
#include <CGAL/AABB_tree.h>
+#pragma clang diagnostic push
+#pragma clang diagnostic ignored "-W#pragma-messages"
#include <CGAL/AABB_traits.h>
+#pragma clang diagnostic pop
#include <CGAL/AABB_face_graph_triangle_primitive.h>
#include "CGALIndexedPolyhedron.H"
#include "PolyhedronReader.H"
diff --git a/bin/tools/RunFunctions b/bin/tools/RunFunctions
index 0194f946..4583f3f7 100644
--- a/bin/tools/RunFunctions
+++ b/bin/tools/RunFunctions
@@ -22,6 +22,9 @@
# The normal locations
[ -n "$FOAM_TUTORIALS" ] || export FOAM_TUTORIALS=$WM_PROJECT_DIR/tutorials
+# Work-around for cleared DYLD_LIBRARY_PATH variable
+[ -z "$DYLD_LIBRARY_PATH" -a -n "$FOAM_DYLD_LIBRARY_PATH" ] \
+ && export DYLD_LIBRARY_PATH="$FOAM_DYLD_LIBRARY_PATH"
#------------------------------------------------------------------------------
diff --git a/bin/tools/lib-dir b/bin/tools/lib-dir
index f423411f..38328167 100755
--- a/bin/tools/lib-dir
+++ b/bin/tools/lib-dir
@@ -162,10 +162,10 @@ then
printf "%s\n" "-L$resolved"
;;
csh-Darwin*)
- echo "setenv DYLD_LIBRARY_PATH $resolved:$DYLD_LIBRARY_PATH"
+ echo "setenv FOAM_DYLD_LIBRARY_PATH $resolved:$FOAM_DYLD_LIBRARY_PATH"
if [ -n "$verboseOutput" ]
then
- echo "setenv DYLD_LIBRARY_PATH $resolved:$DYLD_LIBRARY_PATH" 1>&2
+ echo "setenv FOAM_DYLD_LIBRARY_PATH $resolved:$FOAM_DYLD_LIBRARY_PATH" 1>&2
fi
;;
csh*)
@@ -176,10 +176,10 @@ then
fi
;;
sh-Darwin*)
- echo "DYLD_LIBRARY_PATH=$resolved:$DYLD_LIBRARY_PATH"
+ echo "FOAM_DYLD_LIBRARY_PATH=$resolved:$FOAM_DYLD_LIBRARY_PATH"
if [ -n "$verboseOutput" ]
then
- echo "DYLD_LIBRARY_PATH=$resolved:$DYLD_LIBRARY_PATH" 1>&2
+ echo "FOAM_DYLD_LIBRARY_PATH=$resolved:$FOAM_DYLD_LIBRARY_PATH" 1>&2
fi
;;
*)
diff --git a/etc/config.csh/functions b/etc/config.csh/functions
index c7cec4f0..fe450328 100644
--- a/etc/config.csh/functions
+++ b/etc/config.csh/functions
@@ -31,7 +31,7 @@ alias _foamAddMan 'setenv MANPATH \!*\:${MANPATH}'
# Special treatment for Darwin
# - DYLD_LIBRARY_PATH instead of LD_LIBRARY_PATH
if (`uname -s` == "Darwin") then
- alias _foamAddLib 'setenv DYLD_LIBRARY_PATH \!*\:${DYLD_LIBRARY_PATH}'
+ alias _foamAddLib 'setenv DYLD_LIBRARY_PATH \!*\:${DYLD_LIBRARY_PATH}; setenv FOAM_DYLD_LIBRARY_PATH \!*\:${FOAM_DYLD_LIBRARY_PATH}'
else
alias _foamAddLib 'setenv LD_LIBRARY_PATH \!*\:${LD_LIBRARY_PATH}'
endif
@@ -39,7 +39,11 @@ endif
# Prefix to LD_LIBRARY_PATH with additional checking
# $1 = base directory for 'lib' or 'lib64'
# $2 = fallback libname ('lib' or 'lib64')
-alias _foamAddLibAuto 'eval `$WM_PROJECT_DIR/bin/tools/lib-dir -csh \!*`'
+if (`uname -s` == "Darwin") then
+ alias _foamAddLibAuto 'eval `$WM_PROJECT_DIR/bin/tools/lib-dir -csh \!*`; setenv DYLD_LIBRARY_PATH "$FOAM_DYLD_LIBRARY_PATH"'
+else
+ alias _foamAddLibAuto 'eval `$WM_PROJECT_DIR/bin/tools/lib-dir -csh \!*`'
+endif
# Echo values when FOAM_VERBOSE is on, no-op otherwise
# Source an etc file, possibly with some verbosity
diff --git a/etc/config.csh/mac/paraview b/etc/config.csh/mac/paraview
new file mode 100644
index 00000000..53adbcca
--- /dev/null
+++ b/etc/config.csh/mac/paraview
@@ -0,0 +1,13 @@
+set _paraview = /Applications/[Pp][Aa][Rr][Aa][Vv][Ii][Ee][Ww]*.app
+if ( -d $_paraview ) then
+ if ( $?prompt ) echo Using $_paraview
+ alias paraview "$_paraview/Contents/MacOS/paraview"
+else
+ echo
+ echo "Please download binary Paraview release from"
+ echo "http://paraview.org and install it in /Applications"
+ echo "folder."
+ echo
+endif
+
+#----------------------------- vi: set ft=csh et: ----------------------------
diff --git a/etc/config.csh/paraview b/etc/config.csh/paraview
index b31d544d..d2b6d235 100644
--- a/etc/config.csh/paraview
+++ b/etc/config.csh/paraview
@@ -67,7 +67,12 @@ set archDir="$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER"
# Clean path and library path
eval `$WM_PROJECT_DIR/bin/foamCleanPath -csh-env=PATH "$ParaView_DIR $archDir/ParaView- $archDir/qt-"`
-eval `$WM_PROJECT_DIR/bin/foamCleanPath -csh-env=LD_LIBRARY_PATH "$ParaView_DIR $archDir/ParaView- $archDir/qt-"`
+if ( $foamDarwin ) then
+ eval `$WM_PROJECT_DIR/bin/foamCleanPath -csh-env=FOAM_DYLD_LIBRARY_PATH "$ParaView_DIR $archDir/ParaView- $archDir/qt-"`
+ setenv DYLD_LIBRARY_PATH="$FOAM_DYLD_LIBRARY_PATH"
+else
+ eval `$WM_PROJECT_DIR/bin/foamCleanPath -csh-env=LD_LIBRARY_PATH "$ParaView_DIR $archDir/ParaView- $archDir/qt-"`
+endif
# Evaluate command-line parameters for ParaView
while ( $#argv > 0 )
@@ -168,7 +173,12 @@ default:
endsw
foreach libDir ("lib$WM_COMPILER_LIB_ARCH" "lib")
if ( -d "${qtDir}/${libDir}" ) then
- setenv LD_LIBRARY_PATH "${qtDir}/${libDir}:${LD_LIBRARY_PATH}"
+ if ( $foamDarwin ) then
+ setenv FOAM_DYLD_LIBRARY_PATH "${qtDir}/${libDir}:${FOAM_DYLD_LIBRARY_PATH}"
+ setenv DYLD_LIBRARY_PATH "${qtDir}/${libDir}:${DYLD_LIBRARY_PATH}"
+ else
+ setenv LD_LIBRARY_PATH "${qtDir}/${libDir}:${LD_LIBRARY_PATH}"
+ endif
break
endif
end
@@ -186,7 +196,12 @@ default:
set libDir="$pvLibDir" # Needs lib/paraview-X.X (not lib)
breaksw
endsw
- setenv LD_LIBRARY_PATH "${ParaView_DIR}/${libDir}:${LD_LIBRARY_PATH}"
+ if ( $foamDarwin ) then
+ setenv FOAM_DYLD_LIBRARY_PATH "${ParaView_DIR}/${libDir}:${FOAM_DYLD_LIBRARY_PATH}"
+ setenv DYLD_LIBRARY_PATH "${ParaView_DIR}/${libDir}:${DYLD_LIBRARY_PATH}"
+ else
+ setenv LD_LIBRARY_PATH "${ParaView_DIR}/${libDir}:${LD_LIBRARY_PATH}"
+ endif
break
endif
set pvLibDir="unknown"
diff --git a/etc/config.csh/setup b/etc/config.csh/setup
index 070233dd..15ae6278 100644
--- a/etc/config.csh/setup
+++ b/etc/config.csh/setup
@@ -26,6 +26,8 @@
#
#------------------------------------------------------------------------------
+@ foamDarwin = ( `uname -s` == "Darwin" )
+
# [FOAM_API] - The API level for the project
setenv FOAM_API `$WM_PROJECT_DIR/bin/foamEtcFile -show-api`
@@ -142,13 +144,34 @@ endif
# Clean standard environment variables (PATH, MANPATH, LD_LIBRARY_PATH)
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# Prevent local variables from shadowing setenv variables
-unset PATH MANPATH LD_LIBRARY_PATH DYLD_LIBRARY_PATH
+unset PATH MANPATH
+if ( $foamDarwin ) then
+ unset DYLD_LIBRARY_PATH FOAM_DYLD_LIBRARY_PATH
+else
+ unset LD_LIBRARY_PATH
+endif
+if ( $foamDarwin ) then
+ if (! $?DYLD_LIBRARY_PATH ) setenv DYLD_LIBRARY_PATH
+ if ( $?DYLD_LIBRARY_PATH ) then
+ # Initial value copy
+ setenv FOAM_DYLD_LIBRARY_PATH $DYLD_LIBRARY_PATH
+ else
+ setenv FOAM_DYLD_LIBRARY_PATH
+ endif
+else
+ if (! $?LD_LIBRARY_PATH ) setenv LD_LIBRARY_PATH
+endif
if (! $?MANPATH ) setenv MANPATH
if (! $?LD_LIBRARY_PATH ) setenv LD_LIBRARY_PATH
_foamClean PATH "$foamOldDirs"
_foamClean MANPATH "$foamOldDirs"
-_foamClean LD_LIBRARY_PATH "$foamOldDirs"
+if ( $foamDarwin ) then
+ _foamClean FOAM_DYLD_LIBRARY_PATH "$foamOldDirs"
+ setenv DYLD_LIBRARY_PATH $FOAM_DYLD_LIBRARY_PATH
+else
+ _foamClean LD_LIBRARY_PATH "$foamOldDirs"
+endif
# Setup for OpenFOAM compilation etc
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -157,8 +180,12 @@ _foamEtc -config settings
# Setup for third-party packages
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_foamEtc -config mpi
-_foamEtc -config paraview -- "$FOAM_SETTINGS" # Pass through for evaluation
-_foamEtc -config vtk
+if ( $foamDarwin ) then
+ _foamEtc -config mac/paraview
+else
+ _foamEtc -config paraview -- "$FOAM_SETTINGS" # Pass through for evaluation
+ _foamEtc -config vtk
+endif
_foamEtc -config adios2
_foamEtc -config CGAL
_foamEtc -config FFTW
@@ -179,7 +206,12 @@ endif
_foamClean PATH
_foamClean MANPATH
-_foamClean LD_LIBRARY_PATH
+if ( $foamDarwin ) then
+ _foamClean FOAM_DYLD_LIBRARY_PATH
+ setenv DYLD_LIBRARY_PATH $FOAM_DYLD_LIBRARY_PATH
+else
+ _foamClean LD_LIBRARY_PATH
+endif
# Add trailing ':' for system manpages
if ( $?MANPATH ) then
@@ -194,6 +226,7 @@ endif
if ($?DYLD_LIBRARY_PATH) then
if ("${DYLD_LIBRARY_PATH}" == "") unsetenv DYLD_LIBRARY_PATH
endif
+unsetenv FOAM_DYLD_LIBRARY_PATH
# Cleanup temporary information
@@ -209,6 +242,6 @@ unalias _foamAddLib
unalias _foamAddLibAuto
# Variables (done as final statement for a clean exit code)
-unset cleaned foamOldDirs foundDir prefixDir
+unset cleaned foamOldDirs foundDir prefixDir foamDarwin
#------------------------------------------------------------------------------
diff --git a/etc/config.csh/unset b/etc/config.csh/unset
index 47f4b496..b0fcd814 100644
--- a/etc/config.csh/unset
+++ b/etc/config.csh/unset
@@ -19,6 +19,8 @@
#
#------------------------------------------------------------------------------
+@ foamDarwin = ( `uname -s` == "Darwin" )
+
# Clean standard environment variables (PATH, LD_LIBRARY_PATH, MANPATH)
unset foamClean
@@ -156,9 +158,17 @@ if ( $?foamClean ) then
eval `$foamClean -csh-env=PATH "$foamOldDirs"`
- if ($?LD_LIBRARY_PATH) then
- eval `$foamClean -csh-env=LD_LIBRARY_PATH "$foamOldDirs"`
- if ("${LD_LIBRARY_PATH}" == "") unsetenv LD_LIBRARY_PATH
+ if ( $foamDarwin ) then
+ if ($?DYLD_LIBRARY_PATH) then
+ eval `$foamClean -csh-env=FOAM_DYLD_LIBRARY_PATH "$foamOldDirs"`
+ setenv DYLD_LIBRARY_PATH $FOAM_DYLD_LIBRARY_PATH
+ if ( "${FOAM_DYLD_LIBRARY_PATH}" == "" ) unsetenv DYLD_LIBRARY_PATH
+ endif
+ else
+ if ($?LD_LIBRARY_PATH) then
+ eval `$foamClean -csh-env=LD_LIBRARY_PATH "$foamOldDirs"`
+ if ( "${LD_LIBRARY_PATH}" == "" ) unsetenv LD_LIBRARY_PATH
+ endif
endif
if ($?MANPATH) then
@@ -168,6 +178,9 @@ if ( $?foamClean ) then
endif
+if ( $foamDarwin ) then
+ unsetenv FOAM_DYLD_LIBRARY_PATH
+endif
#------------------------------------------------------------------------------
# Cleanup aliases
@@ -202,6 +215,7 @@ unalias uutil
unalias wmRefresh
unalias foamVersion
unalias foamPV
+if ( $foamDarwin ) unalias paraview
# Remove old completions, which look like:
# complete APPNAME 'p,*,`bash $WM_PROJECT_DIR/etc/ ...
@@ -214,6 +228,6 @@ endif
#------------------------------------------------------------------------------
# Intermediate variables (do as last for a clean exit code)
-unset cleaned foamClean foamOldDirs
+unset cleaned foamClean foamOldDirs foamDarwin
#------------------------------------------------------------------------------
diff --git a/etc/config.sh/CGAL b/etc/config.sh/CGAL
index 98a8693b..531a5189 100644
--- a/etc/config.sh/CGAL
+++ b/etc/config.sh/CGAL
@@ -43,8 +43,8 @@
#------------------------------------------------------------------------------
# USER EDITABLE PART: Changes made here may be lost with the next upgrade
-boost_version=boost_1_66_0
-cgal_version=CGAL-4.12.2
+boost_version=boost-system
+cgal_version=CGAL-system
export BOOST_ARCH_PATH="$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$boost_version"
export CGAL_ARCH_PATH="$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$cgal_version"
diff --git a/etc/config.sh/FFTW b/etc/config.sh/FFTW
index 65e16581..1ddd3bc6 100644
--- a/etc/config.sh/FFTW
+++ b/etc/config.sh/FFTW
@@ -35,7 +35,7 @@
#------------------------------------------------------------------------------
# USER EDITABLE PART: Changes made here may be lost with the next upgrade
-fftw_version=fftw-3.3.7
+fftw_version=fftw-system
export FFTW_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$fftw_version
# END OF (NORMAL) USER EDITABLE PART
diff --git a/etc/config.sh/adios2 b/etc/config.sh/adios2
index 4d2fd7e3..b025c2df 100644
--- a/etc/config.sh/adios2
+++ b/etc/config.sh/adios2
@@ -21,8 +21,8 @@
#------------------------------------------------------------------------------
# USER EDITABLE PART: Changes made here may be lost with the next upgrade
-adios2_version=ADIOS2-2.6.0
-export ADIOS2_ARCH_PATH="$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$adios2_version"
+adios2_version=ADIOS2-system
+export ADIOS2_ARCH_PATH="/usr/local/opt/adios2"
# END OF (NORMAL) USER EDITABLE PART
#------------------------------------------------------------------------------
diff --git a/etc/config.sh/ccmio b/etc/config.sh/ccmio
index 122bd43f..8f8f34e2 100644
--- a/etc/config.sh/ccmio
+++ b/etc/config.sh/ccmio
@@ -27,7 +27,7 @@
#------------------------------------------------------------------------------
# USER EDITABLE PART: Changes made here may be lost with the next upgrade
-ccmio_version=libccmio-2.6.1
+ccmio_version=libccmio-system
export CCMIO_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$ccmio_version
# END OF (NORMAL) USER EDITABLE PART
diff --git a/etc/config.sh/functions b/etc/config.sh/functions
index 9c55f5cd..8ce833ce 100644
--- a/etc/config.sh/functions
+++ b/etc/config.sh/functions
@@ -147,7 +147,7 @@ then
# Prepend DYLD_LIBRARY_PATH
_foamAddLib()
{
- [ -n "$1" ] && export DYLD_LIBRARY_PATH="$1:$DYLD_LIBRARY_PATH"
+ [ -n "$1" ] && export FOAM_DYLD_LIBRARY_PATH="$1:$FOAM_DYLD_LIBRARY_PATH"
}
# Prepend to DYLD_LIBRARY_PATH with additional checking
@@ -155,6 +155,7 @@ then
_foamAddLibAuto()
{
eval "$("$WM_PROJECT_DIR"/bin/tools/lib-dir -sh "$@")";
+ export DYLD_LIBRARY_PATH=$FOAM_DYLD_LIBRARY_PATH
}
fi
diff --git a/etc/config.sh/gperftools b/etc/config.sh/gperftools
index ea58dc58..6812eb1e 100644
--- a/etc/config.sh/gperftools
+++ b/etc/config.sh/gperftools
@@ -37,7 +37,7 @@
#------------------------------------------------------------------------------
# USER EDITABLE PART: Changes made here may be lost with the next upgrade
-gperftools_version=gperftools-2.5
+gperftools_version=gperftools-none
GPERFTOOLS_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$gperftools_version
# END OF (NORMAL) USER EDITABLE PART
diff --git a/etc/config.sh/hypre b/etc/config.sh/hypre
index e401b482..e98bd77f 100644
--- a/etc/config.sh/hypre
+++ b/etc/config.sh/hypre
@@ -27,7 +27,7 @@
#------------------------------------------------------------------------------
# USER EDITABLE PART: Changes made here may be lost with the next upgrade
-hypre_version=hypre-2.19.0
+hypre_version=hypre-system
export HYPRE_ARCH_PATH="$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER$WM_PRECISION_OPTION$WM_LABEL_OPTION/$hypre_version"
# END OF (NORMAL) USER EDITABLE PART
diff --git a/etc/config.sh/kahip b/etc/config.sh/kahip
index 6eb38547..423575c7 100644
--- a/etc/config.sh/kahip
+++ b/etc/config.sh/kahip
@@ -37,7 +37,7 @@
#------------------------------------------------------------------------------
# USER EDITABLE PART: Changes made here may be lost with the next upgrade
-KAHIP_VERSION=kahip-2.12
+KAHIP_VERSION=kahip-system
export KAHIP_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$KAHIP_VERSION
# END OF (NORMAL) USER EDITABLE PART
diff --git a/etc/config.sh/mac/paraview b/etc/config.sh/mac/paraview
new file mode 100644
index 00000000..cc69c194
--- /dev/null
+++ b/etc/config.sh/mac/paraview
@@ -0,0 +1,18 @@
+_paraviews=(/Applications/[Pp][Aa][Rr][Aa][Vv][Ii][Ee][Ww]*.app)
+if test -d $_paraviews;
+then
+ [ "$FOAM_VERBOSE" -a "$PS1" ] && echo Using $_paraviews
+
+ paraview () {
+ local _paraviews=(/Applications/[Pp][Aa][Rr][Aa][Vv][Ii][Ee][Ww]*.app)
+ $_paraviews/Contents/MacOS/paraview "$@"
+ }
+
+ export -f paraview
+else
+ echo
+ echo "Please download binary Paraview release from"
+ echo "http://paraview.org and install it in /Applications"
+ echo "folder."
+ echo
+fi
diff --git a/etc/config.sh/metis b/etc/config.sh/metis
index ce42f62a..8a481a8f 100644
--- a/etc/config.sh/metis
+++ b/etc/config.sh/metis
@@ -34,7 +34,7 @@
#------------------------------------------------------------------------------
# USER EDITABLE PART: Changes made here may be lost with the next upgrade
-METIS_VERSION=metis-5.1.0
+METIS_VERSION=metis-system
export METIS_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER$WM_PRECISION_OPTION$WM_LABEL_OPTION/$METIS_VERSION
# END OF (NORMAL) USER EDITABLE PART
diff --git a/etc/config.sh/mgridgen b/etc/config.sh/mgridgen
index 3ef0ce4a..06cc67ee 100644
--- a/etc/config.sh/mgridgen
+++ b/etc/config.sh/mgridgen
@@ -36,8 +36,8 @@
#------------------------------------------------------------------------------
# USER EDITABLE PART: Changes made here may be lost with the next upgrade
-MGRIDGEN_VERSION=ParMGridGen-1.0
-export MGRIDGEN_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER$WM_PRECISION_OPTION$WM_LABEL_OPTION/$MGRIDGEN_VERSION
+MGRIDGEN_VERSION=ParMGridGen-system
+export MGRIDGEN_ARCH_PATH=/usr/local/opt/parmgridgen
# END OF (NORMAL) USER EDITABLE PART
#------------------------------------------------------------------------------
diff --git a/etc/config.sh/petsc b/etc/config.sh/petsc
index 9ccb0788..2c3f75cf 100644
--- a/etc/config.sh/petsc
+++ b/etc/config.sh/petsc
@@ -27,8 +27,8 @@
#------------------------------------------------------------------------------
# USER EDITABLE PART: Changes made here may be lost with the next upgrade
-petsc_version=petsc-3.14.2
-export PETSC_ARCH_PATH="$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER$WM_PRECISION_OPTION$WM_LABEL_OPTION/$petsc_version"
+petsc_version=petsc-system
+export PETSC_ARCH_PATH="/usr/local/opt/petsc"
# END OF (NORMAL) USER EDITABLE PART
#------------------------------------------------------------------------------
diff --git a/etc/config.sh/scotch b/etc/config.sh/scotch
index b7538a7b..ac5261d8 100644
--- a/etc/config.sh/scotch
+++ b/etc/config.sh/scotch
@@ -34,7 +34,7 @@
#------------------------------------------------------------------------------
# USER EDITABLE PART: Changes made here may be lost with the next upgrade
-SCOTCH_VERSION=scotch_6.0.9
+SCOTCH_VERSION=scotch-system
export SCOTCH_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER$WM_PRECISION_OPTION$WM_LABEL_OPTION/$SCOTCH_VERSION
# END OF (NORMAL) USER EDITABLE PART
diff --git a/etc/config.sh/setup b/etc/config.sh/setup
index b5adaa08..0aef82b6 100644
--- a/etc/config.sh/setup
+++ b/etc/config.sh/setup
@@ -26,6 +26,9 @@
#
#------------------------------------------------------------------------------
+isDarwin=0
+[ "$(uname -s)" = "Darwin" ] && isDarwin=1
+
# [FOAM_API] - The API level for the project
export FOAM_API=$("$WM_PROJECT_DIR/bin/foamEtcFile" -show-api)
@@ -138,10 +141,23 @@ fi
# Clean standard environment variables (PATH, MANPATH, LD_LIBRARY_PATH)
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-export PATH MANPATH LD_LIBRARY_PATH
+export PATH MANPATH
+if [ $isDarwin ]
+then
+ [ -n "$DYLD_LIBRARY_PATH" ] && FOAM_DYLD_LIBRARY_PATH=DYLD_LIBRARY_PATH
+ export DYLD_LIBRARY_PATH FOAM_DYLD_LIBRARY_PATH
+else
+ export LD_LIBRARY_PATH
+fi
_foamClean PATH "$foamOldDirs"
_foamClean MANPATH "$foamOldDirs"
-_foamClean LD_LIBRARY_PATH "$foamOldDirs"
+if [ $isDarwin ]
+then
+ _foamClean FOAM_DYLD_LIBRARY_PATH "$foamOldDirs"
+ DYLD_LIBRARY_PATH=$FOAM_DYLD_LIBRARY_PATH
+else
+ _foamClean LD_LIBRARY_PATH "$foamOldDirs"
+fi
# Setup for OpenFOAM compilation etc
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -150,8 +166,13 @@ _foamEtc -config settings
# Setup for third-party packages
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_foamEtc -config mpi
-_foamEtc -config paraview -- "$@" # Pass through for evaluation
-_foamEtc -config vtk
+if [ $isDarwin ]
+then
+ _foamEtc -config mac/paraview -- "$@" # Pass through for evaluation
+else
+ _foamEtc -config paraview -- "$@" # Pass through for evaluation
+ _foamEtc -config vtk
+fi
_foamEtc -config adios2
_foamEtc -config CGAL
_foamEtc -config scotch
@@ -172,11 +193,23 @@ fi
# Clean environment paths again. Only remove duplicates
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-export PATH MANPATH LD_LIBRARY_PATH
+export PATH MANPATH
+if [ $isDarwin ]
+then
+ export FOAM_DYLD_LIBRARY_PATH DYLD_LIBRARY_PATH
+else
+ export LD_LIBRARY_PATH
+fi
_foamClean PATH
_foamClean MANPATH
-_foamClean LD_LIBRARY_PATH
+if [ $isDarwin ]
+then
+ _foamClean FOAM_DYLD_LIBRARY_PATH
+ DYLD_LIBRARY_PATH="$FOAM_DYLD_LIBRARY_PATH"
+else
+ _foamClean LD_LIBRARY_PATH
+fi
# Add trailing ':' for system manpages
if [ -n "$MANPATH" ]
@@ -192,6 +225,6 @@ fi
. "$WM_PROJECT_DIR/etc/config.sh/functions"
# Variables (done as the last statement for a clean exit code)
-unset cleaned foamOldDirs foundDir prefixDir
+unset cleaned foamOldDirs foundDir prefixDir isDarwin
#------------------------------------------------------------------------------
diff --git a/etc/config.sh/unset b/etc/config.sh/unset
index 699f7052..952bbcf8 100644
--- a/etc/config.sh/unset
+++ b/etc/config.sh/unset
@@ -19,6 +19,9 @@
#
#------------------------------------------------------------------------------
+isDarwin=0
+[ "$(uname -s)" = "Darwin" ] && isDarwin=1
+
# Clean standard environment variables (PATH, LD_LIBRARY_PATH, MANPATH)
foamClean=$WM_PROJECT_DIR/bin/foamCleanPath
[ -f "$foamClean" -a -x "$foamClean" ] || unset foamClean
@@ -149,21 +152,35 @@ unset SCOTCH_ARCH_PATH
#------------------------------------------------------------------------------
# Cleanup environment
-# PATH, LD_LIBRARY_PATH, MANPATH
+# PATH, [DY]LD_LIBRARY_PATH, MANPATH
if [ -n "$foamClean" ]
then
eval "$($foamClean -sh-env=PATH $foamOldDirs)"
- eval "$($foamClean -sh-env=LD_LIBRARY_PATH $foamOldDirs)"
+ if [ $isDarwin ]
+ then
+ eval "$($foamClean -sh-env=FOAM_LD_LIBRARY_PATH $foamOldDirs)"
+ DYLD_LIBARARY_PATH="$FOAM_DYLD_LIBRARY_PATH"
+ else
+ eval "$($foamClean -sh-env=LD_LIBRARY_PATH $foamOldDirs)"
+ fi
eval "$($foamClean -sh-env=MANPATH $foamOldDirs)"
fi
-[ -n "$LD_LIBRARY_PATH" ] || unset LD_LIBRARY_PATH
+if [ $isDarwin ]
+then
+ [ -n "$DYLD_LIBRARY_PATH" ] || unset DYLD_LIBRARY_PATH
+ unset FOAM_DYLD_LIBRARY_PATH
+else
+ [ -n "$LD_LIBRARY_PATH" ] || unset LD_LIBRARY_PATH
+fi
[ -n "$MANPATH" ] || unset MANPATH
#------------------------------------------------------------------------------
# Cleanup aliases and functions
+[ $isDarwin ] && unset -f paraview 2>/dev/null
+
unalias wmSet 2>/dev/null
unalias wmInt32 2>/dev/null
unalias wmInt64 2>/dev/null
@@ -218,6 +235,6 @@ unset _of_complete_cache_
#------------------------------------------------------------------------------
# Intermediate variables (do as last for a clean exit code)
-unset cleaned foamClean foamOldDirs
+unset cleaned foamClean foamOldDirs isDarwin
#------------------------------------------------------------------------------
diff --git a/etc/config.sh/vtk b/etc/config.sh/vtk
index 312034f8..972e6564 100644
--- a/etc/config.sh/vtk
+++ b/etc/config.sh/vtk
@@ -34,13 +34,13 @@
#------------------------------------------------------------------------------
# USER EDITABLE PART: Changes made here may be lost with the next upgrade
-vtk_version=VTK-8.2.0
-mesa_version=mesa-17.1.1
+vtk_version=VTK-system
+mesa_version=mesa-none
mesa_llvm=none
-export VTK_DIR="$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$vtk_version"
-export MESA_ARCH_PATH="$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$mesa_version"
-export LLVM_ARCH_PATH="$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH/$mesa_llvm"
+export VTK_DIR=
+export MESA_ARCH_PATH=
+export LLVM_ARCH_PATH=
# Define paraview-mesa directory as required
unset ParaView_MESA_DIR
diff --git a/modules/OpenQBMM/applications/solvers/multiphase/phaseCompressibleTurbulenceModels/kineticTheory/derivedFvPatchFields/JohnsonJacksonParticleSlip/JohnsonJacksonParticleSlipFvPatchVectorField.C b/modules/OpenQBMM/applications/solvers/multiphase/phaseCompressibleTurbulenceModels/kineticTheory/derivedFvPatchFields/JohnsonJacksonParticleSlip/JohnsonJacksonParticleSlipFvPatchVectorField.C
index 92cc8812..79460b04 100644
--- a/modules/OpenQBMM/applications/solvers/multiphase/phaseCompressibleTurbulenceModels/kineticTheory/derivedFvPatchFields/JohnsonJacksonParticleSlip/JohnsonJacksonParticleSlipFvPatchVectorField.C
+++ b/modules/OpenQBMM/applications/solvers/multiphase/phaseCompressibleTurbulenceModels/kineticTheory/derivedFvPatchFields/JohnsonJacksonParticleSlip/JohnsonJacksonParticleSlipFvPatchVectorField.C
@@ -265,7 +265,6 @@ void Foam::JohnsonJacksonParticleSlipFvPatchVectorField::updateCoeffs()
)
.subDict("RAS")
.subDict("kineticTheoryCoeffs")
- .lookup("alphaMax")
);
scalarField c
diff --git a/modules/avalanche/src/avalanche/gistools/shapefile.C b/modules/avalanche/src/avalanche/gistools/shapefile.C
index 5dbffd08..a295db14 100644
--- a/modules/avalanche/src/avalanche/gistools/shapefile.C
+++ b/modules/avalanche/src/avalanche/gistools/shapefile.C
@@ -49,6 +49,9 @@ namespace
//
// Compare with OpenFOAM endian::swap32()
+#if defined(ntohl)
+#undef ntohl
+#endif
static inline uint32_t ntohl(uint32_t u)
{
#if (__BYTE_ORDER__ == __ORDER_BIG_ENDIAN__)
diff --git a/src/OpenFOAM/containers/Lists/UList/UList.C b/src/OpenFOAM/containers/Lists/UList/UList.C
index 118c4e1f..382ae1cd 100644
--- a/src/OpenFOAM/containers/Lists/UList/UList.C
+++ b/src/OpenFOAM/containers/Lists/UList/UList.C
@@ -32,6 +32,7 @@ License
#include "labelRange.H"
#include <algorithm>
+#include <random>
// * * * * * * * * * * * * Protected Member Functions * * * * * * * * * * * //
@@ -281,7 +282,9 @@ void Foam::stableSort(UList<T>& a, const Compare& comp)
template<class T>
void Foam::shuffle(UList<T>& a)
{
- std::random_shuffle(a.begin(), a.end());
+ std::random_device rd;
+ std::mt19937 g(rd());
+ std::shuffle(a.begin(), a.end(), g);
}
diff --git a/src/meshTools/searchableSurfaces/searchableSphere/searchableSphere.C b/src/meshTools/searchableSurfaces/searchableSphere/searchableSphere.C
index f1f2057a..e528c7f4 100644
--- a/src/meshTools/searchableSurfaces/searchableSphere/searchableSphere.C
+++ b/src/meshTools/searchableSurfaces/searchableSphere/searchableSphere.C
@@ -39,6 +39,9 @@ https://www.geometrictools.com/Documentation/DistancePointEllipseEllipsoid.pdf
#include "searchableSphere.H"
#include "addToRunTimeSelectionTable.H"
+#if defined(__APPLE__)
+#include <array>
+#endif
// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
diff --git a/src/renumber/SloanRenumber/SloanRenumber.C b/src/renumber/SloanRenumber/SloanRenumber.C
index c7a01e6b..4fbc2cc8 100644
--- a/src/renumber/SloanRenumber/SloanRenumber.C
+++ b/src/renumber/SloanRenumber/SloanRenumber.C
@@ -38,7 +38,10 @@ License
#include <vector>
#include <iostream>
#include <boost/graph/adjacency_list.hpp>
+#pragma clang diagnostic push
+#pragma clang diagnostic ignored "-W#pragma-messages"
#include <boost/graph/sloan_ordering.hpp>
+#pragma clang diagnostic pop
#include <boost/graph/properties.hpp>
#include <boost/graph/bandwidth.hpp>
#include <boost/graph/profile.hpp>
diff --git a/wmake/rules/darwin64Clang/c b/wmake/rules/darwin64Clang/c
index 202efeb3..7a3e1948 100644
--- a/wmake/rules/darwin64Clang/c
+++ b/wmake/rules/darwin64Clang/c
@@ -1,5 +1,7 @@
include $(GENERAL_RULES)/Clang/c
+c = xcrun cc
+
cARCH = -m64 -ftrapping-math
# Compile option is non-mandatory, but must be non-empty
diff --git a/wmake/rules/darwin64Clang/c++ b/wmake/rules/darwin64Clang/c++
index 4908d100..707f3daf 100644
--- a/wmake/rules/darwin64Clang/c++
+++ b/wmake/rules/darwin64Clang/c++
@@ -1,5 +1,7 @@
include $(GENERAL_RULES)/Clang/c++
+CC = xcrun c++ -std=c++14
+
c++ARCH = -m64 -pthread -ftrapping-math
include $(DEFAULT_RULES)/c++$(WM_COMPILE_OPTION)
diff --git a/wmake/rules/darwin64Clang/cgal b/wmake/rules/darwin64Clang/cgal
index b04e6b0c..f1d0ae09 100644
--- a/wmake/rules/darwin64Clang/cgal
+++ b/wmake/rules/darwin64Clang/cgal
@@ -6,9 +6,6 @@ CGAL_INC = \
$(foreach dir,$(BOOST_INC_DIR),-I$(dir)) \
$(foreach dir,$(CGAL_INC_DIR),-I$(dir))
-CGAL_LIBS = \
- $(foreach dir,$(BOOST_LIB_DIR),-L$(dir)) \
- $(foreach dir,$(CGAL_LIB_DIR),-L$(dir)) \
- -lCGAL
+CGAL_LIBS =
# ----------------------------------------------------------------------------
diff --git a/wmake/scripts/have_adios2 b/wmake/scripts/have_adios2
index 25491fe5..86f57260 100644
--- a/wmake/scripts/have_adios2
+++ b/wmake/scripts/have_adios2
@@ -72,13 +72,13 @@ INFORMATION
# -> HAVE_ADIOS2, ADIOS2_INC_DIR, ADIOS2_LIB_DIR
search_adios2()
{
- local warn # warn="==> skip adios2"
- local incName="adios2.h"
- local libName="libadios2"
- local libName2="libadios2_cxx11_mpi"
+ local warn="==> skip adios2"
+ local confName="adios2-config"
local prefix="${1:-system}"
local header library
+ local config cxxflags cxxlibs
+ echo $confName $prefix
# ----------------------------------
if isNone "$prefix"
@@ -87,25 +87,27 @@ search_adios2()
return 1
elif hasAbsdir "$prefix"
then
- header=$(findFirstFile "$prefix/include/$incName")
- library=$(findExtLib "$libName")
+ config="$prefix/bin/$confName"
+ cxxflags=$($config --cxx-flags)
+ cxxlibs=$($config -cxx-libs)
elif isSystem "$prefix"
then
- header=$(findSystemInclude -name="$incName")
- prefix=$(sysPrefix "$header")
+ config="$confName"
+ cxxflags=$($config --cxx-flags)
+ cxxlibs=$($config -cxx-libs)
else
unset prefix
fi
# ----------------------------------
# Header
- [ -n "$header" ] || {
+ [ -n "$cxxflags" ] || {
[ -n "$warn" ] && echo "$warn (no header)"
return 2
}
# Library
- [ -n "$library" ] \
+ [ -n "$cxxlibs" ] \
|| library=$(findLibrary -prefix="$prefix" -name="$libName") \
|| library=$(findLibrary -prefix="$prefix" -name="$libName2") \
|| {
@@ -118,8 +120,6 @@ search_adios2()
# OK
export HAVE_ADIOS2=true
export ADIOS2_ARCH_PATH="$prefix"
- export ADIOS2_INC_DIR="${header%/*}" # Basename
- export ADIOS2_LIB_DIR="${library%/*}" # Basename
}
diff --git a/wmake/scripts/have_mgridgen b/wmake/scripts/have_mgridgen
index 6c00f401..bc117bf9 100644
--- a/wmake/scripts/have_mgridgen
+++ b/wmake/scripts/have_mgridgen
@@ -105,11 +105,13 @@ search_mgridgen()
# Ensure consistent sizes with OpenFOAM and mgridgen header
# Extract typedef for idxtype, realtype
- label=$(sed -ne \
- 's/^.*typedef *\([^ ]*\) *idxtype.*/\1/ip' \
+ label=$(perl -n \
+ -e '/^.*typedef *([^ ]*) *idxtype.*/i or next;' \
+ -e 'print($1) if $1;' \
"$header")
- scalar=$(sed -ne \
- 's/^.*typedef *\([^ ]*\) *realtype.*/\1/ip' \
+ scalar=$(perl -n \
+ -e '/^.*typedef *([^ ]*) *realtype.*/i or next;' \
+ -e 'print($1) if $1;' \
"$header")
: "${label:=unknown}"