This package will help process, merge and link fastq in user specified directory from manifest file
- Free software: Apache Software License 2.0
- Documentation: https://process-fastq.readthedocs.io.
Usage can be found here: https://process-fastq.readthedocs.io/en/latest/usage.html
- Given Manifest file, path to location of raw fastq, path to where they need to linked:
- Get all the folders for the samples and the fastq file
- Check quickly the lenght of the reads if read length is not the same use the shorter read length and trim the fastq
- Merge the final fastq if comming from multiple runs.
- Link all the fastq with the folder structure in user provided location
This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.