startup_mtex.m

function startup_mtex(varargin)
% init MTEX session
%
% This is the startup file for MTEX. In general it is not necessary to edit
% this file. The startup options of MTEX can be edited in the file
% mtex_settings.m in this directory.
%

% Check MATLAB version
% --------------------
lasterr('') %#ok<LERR> %reset all errors

if MATLABverLessThan('8.6')
  warning(['MTEX may not be fully functional because your MATLAB version ',version,...
    ' is outdated and not longer supported by MTEX. The oldest Matlab ',...
    'version MTEX has been tested on is Matlab 2016b (vers. 8.6).']);
end

warning('off','MATLAB:contour:ConstantData')
 
% path to this function to be considered as the root of the MTEX
% installation
local_path = fileparts(mfilename('fullpath'));

% needs installation ?
if ~isdeployed, do_install(local_path); end

% initialize MTEX
fprintf('initialize');

%read MTEX version from version file
try
  fid = fopen('VERSION','r');
  MTEXversion = fgetl(fid);
  fclose(fid);
  fprintf(' %s  ', MTEXversion);
catch
  MTEXversion = 'MTEX';
end

p();

% setup search path
if ~isdeployed, setMTEXPath(local_path); p(); end

% set path to MTEX directories
setMTEXpref('mtexPath',local_path);
setMTEXpref('DataPath',fullfile(local_path,'data'));
setMTEXpref('version',MTEXversion);
setMTEXpref('generatingHelpMode',false);
p();

% init settings
mtex_settings;
p();

% old MATLAB version
global useBSXFUN;
useBSXFUN = MATLABverLessThan('9.6');

% make help search-able
if ~isdeployed
  if isempty(dir(fullfile(local_path,'doc','html','helpsearch*')))
    disp('Creating search data base for MTEX documentation.')
    builddocsearchdb(fullfile(local_path,'doc','html'));
  end
end

% finish
if isempty(lasterr) % everything fine
  fprintf(repmat('\b',1,length(MTEXversion)+18));
else
  disp(' done!')
end

if isempty(javachk('desktop')) && ~check_option(varargin,'noMenu')
  MTEXmenu;
end

end


% --------- private functions ----------------------

% mtex installation
% -----------------
function do_install(local_path)

% extract MATLAB search path
cellpath = regexp(path,['(.*?)\' pathsep],'tokens');
cellpath = [cellpath{:}]; %cellpath = regexp(path, pathsep,'split');

% if there is already an MTEX version running
% --> remove it
if isappdata(0,'mtex')
  
  oldMTEX = getappdata(0,'mtex');
  
  rmappdata(0,'mtex');
  if isappdata(0,'tmpData'), rmappdata(0,'tmpData'); end
  for k=1:10
    name = ['data2beDisplayed_' int2str(k)];
    if isappdata(0,name), rmappdata(0,name); end
  end
  disp('I found another version of MTEX and remove it from the current search path!');
  
  close all
  old = warning('off');
  evalin('base','clear classes')
  warning(old);
  
  if ~isfield(oldMTEX,'mtexPath') || ~strcmpi(oldMTEX.mtexPath,local_path) 
  
    inst_dir = cellpath(~cellfun('isempty',strfind(cellpath,oldMTEX.mtexPath)));
    if ~isempty(inst_dir), rmpath(inst_dir{:}); end
    
    % update search path
    cellpath = regexp(path,['(.*?)\' pathsep],'tokens');
    cellpath = [cellpath{:}]; %cellpath = regexp(path, pathsep,'split');
    
    local_path = fileparts(mfilename('fullpath'));
  end
end

% MTEX is "installed" if the root directory is part of the search path
if any(strcmpi(local_path,cellpath))
  setappdata(0,'MTEXInstalled',true);
else
  setappdata(0,'MTEXInstalled',false);
end

% there should not be any other directory part of the search path except
% for the mtex root directory
% remove all previous mtex paths from search path
if any(strcmpi(fullfile(local_path,'geometry'),cellpath))
  
  inst_dir = cellpath(~cellfun('isempty',strfind(cellpath,local_path)));
  if ~isempty(inst_dir), rmpath(inst_dir{:}); end
  
end

addpath(local_path);

end

% set MTEX search path
function setMTEXPath(local_path)

exclPath = {'data','makeDoc','templates','nfft','ODF_Components_old','kernelFunctions','deprecated'};

% exclude compatibility directories according to MATLAB version
dirs = dir([local_path filesep 'compatibility' filesep 'less*']);
for k = 1:length(dirs)
  if ~MATLABverLessThan(dirs(k).name(5:end))
    exclPath = [exclPath,dirs(k).name]; %#ok<AGROW>
  end
end


warning off
addpath_recurse(local_path,exclPath);
warning on

end

% check MATLAB version
% --------------------
function result = MATLABverLessThan(verstr)

MATLABver = ver('MATLAB');

toolboxParts = getParts(MATLABver(1).Version);
verParts = getParts(verstr);

result = (sign(toolboxParts - verParts) * [1; .1; .01]) < 0;

end


function parts = getParts(V)
parts = sscanf(V, '%d.%d.%d')';
if length(parts) < 3
  parts(3) = 0; % zero-fills to 3 elements
end
end

function p()
if isempty(lasterr)
  fprintf('.');
end
end


% -----------------------------------------------------------------------
function addpath_recurse(strStartDir, caStrsIgnoreDirs, strXorIntAddpathMode, blnRemDirs, blnDebug)
%ADDPATH_RECURSE  Adds (or removes) the specified directory and its subfolders
% addpath_recurse(strStartDir, caStrsIgnoreDirs, strXorIntAddpathMode, blnRemDirs, blnDebug)
%
% By default, all hidden directories (preceded by '.'), overloaded method directories
% (preceded by '@'), and directories named 'private' or 'CVS' are ignored.
%
% Input Variables
% ===============
% strStartDir::
%   Starting directory full path name.  All subdirectories (except ignore list) will be added to the path.
%   By default, uses current directory.
% caStrsIgnoreDirs::
%   Cell array of strings specifying directories to ignore.
%   Will also ignore all subdirectories beneath these directories.
%   By default, empty list. i.e. {''}.
% strXorIntAddpathMode::
%   Addpath mode, either 0/1, or 'begin','end'.
%   By default, prepends.
% blnRemDirs::
%   Boolean, when true will run function "in reverse", and 
%   recursively removes directories from starting path.
%   By default, false.
% blnDebug::
%   Boolean, when true prints debug info.
%   By default, false.
%
% Output Variables
% ================
% None. If blnDebug is specified, diagnostic information will print to the screen.
%
% Example(s)
% ==========
% (1) addpath_recurse();                                      %Take all defaults. 
% (2) addpath_recurse('strStartDir');                         %Start at 'strStartDir', take other defaults. i.e. Do addpath().
% (3) addpath_recurse('strStartDir', '', 0, true);            %Start at 'strStartDir', and undo example (2). i.e. Do rmpath().
% (4) addpath_recurse('strStartDir', '', 'end', false, true); %Do example (2) again, append to path, and display debug info.
% (5) addpath_recurse('strStartDir', '', 1, true, true);      %Undo example (4), and display debug info.

%
% See Also
% ========
% addpath()
%
% Developers
% ===========
% Init  Name             Contact
% ----  ---------------  ---------------------------------------------
% AK    Anthony Kendall  anthony [dot] kendall [at] gmail [dot] com
% JMcD  Joe Mc Donnell   
%
% Modifications
% =============
% Version   Date      Who    What
% --------  --------  -----  --------------------------------------------------------------------
% 00.00.00  20080808  AK     First created.
%           20090410  JMcD   Redo input argument processing/checking.
%                            Only do processing/checking once. Do recursion in separate function.
%           20090411  JMcD   Add debugging mode to display run info.
%           20090414  AK     Modified variable names, small edits to code, ignoring CSV by default
%           20091104  AK     Modified an optimization for Mac compatibility,
%                            recursive calls to just build the string for
%                            addpath/rmpath rather than call it each time

%--------------------------------------------------------------------------
%Error messages.
strErrStartDirNoExist = 'Start directory does not exist ???';
strErrIgnoreDirsType = 'Ignore directories must be a string or cell array. See HELP ???';
strErrIllAddpathMode = 'Illegal value for addpath() mode.  See HELP ???';
strErrIllRevRecurseRemType = 'Illegal value for reverse recurse remove, must be a logical/boolean.  See HELP ??';

strErrWrongNumArg = 'Wrong number of input arguments.  See HELP ???';
strAddpathErrMessage = strErrIllAddpathMode;

%Set input args defaults and/or check them.
intNumInArgs = nargin();
assert(intNumInArgs <= 5, strErrWrongNumArg);

if intNumInArgs < 1
 strStartDir = pwd();
end

if intNumInArgs < 2
  caStrsIgnoreDirs = {''};
end

if intNumInArgs >= 2 && ischar(caStrsIgnoreDirs)
  caStrsIgnoreDirs = { caStrsIgnoreDirs };
end

if intNumInArgs < 3 || (intNumInArgs >= 3 && isempty(strXorIntAddpathMode))
  strXorIntAddpathMode = 0;
end

if intNumInArgs >= 3 && ischar(strXorIntAddpathMode)  %Use 0/1 internally.
  strAddpathErrMessage = sprintf('Input arg addpath() mode "%s" ???\n%s', strXorIntAddpathMode, strErrIllAddpathMode);
  assert(any(strcmpi(strXorIntAddpathMode, {'begin', 'end'})), strAddpathErrMessage);
  strXorIntAddpathMode = strcmpi(strXorIntAddpathMode, 'end'); %When 'end' 0 sets prepend, otherwise 1 sets append.
end

if intNumInArgs < 4
  blnRemDirs = false;
end

if intNumInArgs < 5
  blnDebug = false;
end

if size(caStrsIgnoreDirs, 1) > 1
  caStrsIgnoreDirs = caStrsIgnoreDirs'; %Transpose from column to row vector, in theory.
end

%Check input args OK, before we do the thing.
strErrStartDirNoExist = sprintf('Input arg start directory "%s" ???\n%s', strStartDir, strErrStartDirNoExist);
assert(exist(strStartDir, 'dir') > 0, strErrStartDirNoExist);
assert(iscell(caStrsIgnoreDirs), strErrIgnoreDirsType);
assert(strXorIntAddpathMode == 0 || strXorIntAddpathMode == 1, strAddpathErrMessage);
assert(islogical(blnRemDirs), strErrIllRevRecurseRemType);
assert(islogical(blnDebug), 'Debug must be logical/boolean.  See HELP.');

if blnDebug
  intPrintWidth = 34;
  rvAddpathModes = {'prepend', 'append'};
  strAddpathMode = char(rvAddpathModes{ fix(strXorIntAddpathMode) + 1});
  strRevRecurseDirModes = { 'false', 'true' };
  strRevRecurseDirs = char(strRevRecurseDirModes{ fix(blnRemDirs) + 1 });
  strIgnoreDirs = '';
  for intD = 1 : length(caStrsIgnoreDirs)
    if ~isempty(strIgnoreDirs)
      strIgnoreDirs = sprintf('%s, ', strIgnoreDirs);
    end
    strIgnoreDirs = sprintf('%s%s', strIgnoreDirs, char(caStrsIgnoreDirs{intD}));
  end
  strTestModeResults = sprintf('... Debug mode, start recurse addpath arguments ...');
  strTestModeResults = sprintf('%s\n%*s: "%s"', strTestModeResults, intPrintWidth, 'Start directory', strStartDir);
  strTestModeResults = sprintf('%s\n%*s: "%s"', strTestModeResults, intPrintWidth, 'Ignore directories', strIgnoreDirs);
  strTestModeResults = sprintf('%s\n%*s: "%s"', strTestModeResults, intPrintWidth, 'addpath() mode', strAddpathMode);
  strTestModeResults = sprintf('%s\n%*s: "%s"', strTestModeResults, intPrintWidth, 'Reverse recurse remove directories', strRevRecurseDirs);
  disp(strTestModeResults);
end

%Don't print the MATLAB warning if remove path string is not found
if blnRemDirs, warning('off', 'MATLAB:rmpath:DirNotFound'); end

%Build the list of directories
caAddRemDirs = {};
[caAddRemDirs] = addpath_recursively(caAddRemDirs, strStartDir, caStrsIgnoreDirs, strXorIntAddpathMode, blnRemDirs,blnDebug);

%Remove or add the directory from the search path
if blnRemDirs
  if blnDebug, fprintf('"%s", removing from search path ...', strStartDir); end
  rmpath(caAddRemDirs{:})
else
  if blnDebug, fprintf('"%s", adding to search path ...', strStartDir); end
  addpath(caAddRemDirs{:}, strXorIntAddpathMode);
end

%Restore the warning state for rmpath
if blnRemDirs, warning('on', 'MATLAB:rmpath:DirNotFound'); end

end % function addpath_recurse
%--------------------------------------------------------------------------

%--------------------------------------------------------------------------
function [caAddRemDirs] = addpath_recursively(caAddRemDirs, strStartDir, caStrsIgnoreDirs, strXorIntAddpathMode, blnRemDirs, blnDebug)
%Note:Don't need to check input arguments, because caller already has.

%Add this directory to the add/remove path list
caAddRemDirs = [caAddRemDirs,strStartDir];

strFileSep = filesep();
%Get list of directories beneath the specified directory, this two-step process is faster.
if ispc
    saSubDirs = dir(sprintf('%s%s', strStartDir, strFileSep));
else
    saSubDirs = dir(strStartDir);
end
saSubDirs = saSubDirs([saSubDirs.isdir]); %Handles files without extensions that otherwise pass through previous filter

%Loop through the directory list and recursively call this function.
for intDirIndex = 1 : length(saSubDirs)
  strThisDirName = saSubDirs(intDirIndex).name;
  blnIgnoreDir = any(strcmpi(strThisDirName, [ {'private'}, {'CVS'}, {'.'}, {'..'}, caStrsIgnoreDirs(:)' ]));
  blnDirBegins = any(strncmp(strThisDirName, {'@', '.','+'}, 1));
  if ~(blnIgnoreDir || blnDirBegins)
    strThisStartDir = sprintf('%s%s%s', strStartDir, strFileSep, strThisDirName);
    if blnDebug, fprintf('"%s", recursing ...', strThisStartDir); end
    [caAddRemDirs] = addpath_recursively(caAddRemDirs, strThisStartDir, caStrsIgnoreDirs, strXorIntAddpathMode, blnRemDirs, blnDebug);
  end
end % for each directory.

end % function addpath_recursively
%--------------------------------------------------------------------------
%__END__