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DESCRIPTION
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DESCRIPTION
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Package: erccdashboard
Type: Package
Title: Assess Differential Gene Expression Experiments with ERCC
Controls
Version: 1.21.1
Author: Sarah Munro, Steve Lund
Maintainer: Sarah Munro <[email protected]>
Description: Technical performance metrics for differential gene expression
experiments using External RNA Controls Consortium (ERCC) spike-in ratio
mixtures.
URL: https://github.com/munrosa/erccdashboard,
http://tinyurl.com/erccsrm
BugReports: https://github.com/munrosa/erccdashboard/issues
Depends:
R (>= 3.2),
ggplot2 (>= 2.1.0),
gridExtra (>= 2.0.0)
Imports:
edgeR,
gplots,
grid,
gtools,
limma,
locfit,
MASS,
plyr,
qvalue,
reshape2,
ROCR,
scales,
stringr
License: GPL (>=2)
Collate:
runDashboard.R
initDat.R
dashboardFile.R
plotAdjust.R
loadERCCInfo.R
loadExpMeas.R
getDesignMat.R
normalizeDat.R
prepERCCDat.R
est_r_m.R
dynRangePlot.R
geneExprTest.R
testDECount.R
testDEArray.R
erccROC.R
estLODR.R
printLODRres.R
saveERCCPlots.R
maSignal.R
annotLODR.R
biocViews: ImmunoOncology, GeneExpression, Transcription, AlternativeSplicing,
DifferentialExpression, DifferentialSplicing, Genetics,
Microarray, mRNAMicroarray, RNASeq, BatchEffect,
MultipleComparison, QualityControl
LazyData: yes
Roxygen: list(wrap = FALSE)
Packaged: 2014-09-29 02:40:01 UTC; smunro
RoxygenNote: 5.0.1