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Minor fixes to metagenomics pipeline docs #235

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Triggered via pull request June 22, 2026 23:18

bnovak32

opened #203

DEV_Metagenomics_ppl_updates_260622

Status Success

Total duration 16s

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check_typos.yml

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10 errors and 9 warnings

Discover typos with codespell: Methyl-Seq/Workflow_Documentation/isa_to_runsheet_plugins/dp_tools__methylseq_rna/checks.py#L1147

contraint ==> constraint

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contraint ==> constraint

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comparision ==> comparison

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comparision ==> comparison

Discover typos with codespell: Methyl-Seq/Workflow_Documentation/isa_to_runsheet_plugins/dp_tools__methylseq_rna/checks.py#L986

contraint ==> constraint

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accomodate ==> accommodate

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contraint ==> constraint

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indicies ==> indices

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postive ==> positive

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occured ==> occurred

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Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

Discover typos with codespell: 3rd_Party_Licenses/Metagenomics_3rd_Party_Software_Licenses/kofam_scan_LICENSE.pdf#L0

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Discover typos with codespell: 3rd_Party_Licenses/RNAseq_3rd_Party_Software_Licenses/PYTHON_LICENSE.pdf#L0

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Discover typos with codespell: 3rd_Party_Licenses/Microarray_Agilent_1_Channel_3rd_Party_Software_Licenses/PYTHON_LICENSE.pdf#L0

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Discover typos with codespell: 3rd_Party_Licenses/Microarray_Affymetrix_3rd_Party_Software_Licenses/tibble_LICENSE.pdf#L0

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Discover typos with codespell: Licenses/Microarray_GPL-3.0_with_Additional_Requirements_License.pdf#L0

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Discover typos with codespell: Microarray/images/GL-microarray-overview.pdf#L0

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