Illumina

GeneLab bioinformatics processing pipeline for Illumina metagenomics sequencing data

The document GL-DPPD-7107-B.md holds an overview and example commands for how GeneLab processes Illumina metagenomics sequencing datasets. See the Repository Links descriptions below for more information. Processed data output files and a GeneLab data processing summary are provided for each GLDS dataset in the Open Science Data Repository (OSDR).

Note: The exact processing commands and MGIllumina or MetagenomeSeq workflow version used for specific GLDS datasets can be found in the *_processing_info.zip file under "Files" for each respective GLDS dataset in the Open Science Data Repository (OSDR).

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Repository Links

• Pipeline_GL-DPPD-7107_Versions

  • Contains the current and previous GeneLab Illumina metagenomics sequencing data processing pipeline (MGIllumina) versions documentation

• Workflow_Documentation

  • Contains instructions for installing and running the GeneLab MGIllumina or MetagenomeSeq workflows

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Developed and maintained by:
Michael D. Lee (Mike.Lee@nasa.gov) and Olabiyi A.Obayomi (olabiyi.a.obayomi@nasa.gov)