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i. Matlab program, with amplicon.m being the main fuction. The primary output from this function is 'Percent', which is a measure of indel frequency based in amplicon length and edits in the sgRNA sequence. To run this program, place a breakpoint at the end of the code, edit the input .csv file (sample provided) and specify the folder with .fastq files.
ii. Awk scripts used to parse for indels in the exome sequencing study.