Dockerfile

FROM r-base:latest

MAINTAINER Alper Kucukural "alper.kucukural@umassmed.edu"

# Install dependencies and Download and install shiny server
RUN apt-get update && apt-get install -y -t unstable \
    sudo \
    gdebi-core \
    pandoc \
    pandoc-citeproc \
    libcurl4-gnutls-dev \
    libcairo2-dev/unstable \
    libxt-dev && \
    wget --no-verbose https://s3.amazonaws.com/rstudio-shiny-server-os-build/ubuntu-12.04/x86_64/VERSION -O "version.txt" && \
    VERSION=$(cat version.txt)  && \
    wget --no-verbose "https://s3.amazonaws.com/rstudio-shiny-server-os-build/ubuntu-12.04/x86_64/shiny-server-$VERSION-amd64.deb" -O ss-latest.deb && \
    gdebi -n ss-latest.deb && \
    rm -f version.txt ss-latest.deb && \
    rm -rf /var/lib/apt/lists/*

EXPOSE 3838

RUN echo "r <- getOption('repos'); r['CRAN'] <- 'http://cran.us.r-project.org'; options(repos = r);" > ~/.Rprofile
RUN apt-get update && apt-get install -y -t unstable git vim wget libssl-dev libv8-dev libxml2-dev 
RUN R -e ' install.packages("devtools");'
RUN R -e ' devtools::install_github("rstudio/d3heatmap");'
RUN R -e ' install.packages("BiocManager"); BiocManager::install("debrowser");'

RUN git clone https://github.com/UMMS-Biocore/debrowser.git /srv/shiny-server/debrowser
RUN chown shiny:shiny /srv/shiny-server/debrowser -R

COPY shiny-server.sh /usr/bin/shiny-server.sh

CMD ["/usr/bin/shiny-server.sh"]: