diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index a8796bd..194d1d7 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -4,7 +4,7 @@ repos: - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v5.0.0 + rev: v6.0.0 hooks: - id: check-ast - id: check-case-conflict @@ -27,36 +27,36 @@ repos: args: [--mapping, '4', --sequence, '4', --offset, '0'] - repo: https://github.com/macisamuele/language-formatters-pre-commit-hooks - rev: v2.14.0 + rev: v2.16.0 hooks: - id: pretty-format-toml args: [--autofix, --indent, '4'] - repo: https://github.com/pycqa/isort - rev: 6.0.1 + rev: 7.0.0 hooks: - id: isort args: [--profile, black, --settings-path, pyproject.toml] - repo: https://github.com/ikamensh/flynt/ - rev: 1.0.1 + rev: 1.0.6 hooks: - id: flynt - repo: https://github.com/asottile/pyupgrade - rev: v3.19.1 + rev: v3.21.2 hooks: - id: pyupgrade args: [--py38-plus] - repo: https://github.com/psf/black-pre-commit-mirror - rev: 25.1.0 + rev: 26.1.0 hooks: - id: black args: [--config=pyproject.toml] - repo: https://github.com/adamchainz/blacken-docs - rev: 1.19.1 + rev: 1.20.0 hooks: - id: blacken-docs additional_dependencies: @@ -77,14 +77,14 @@ repos: # args: [--config-file=pyproject.toml] - repo: https://github.com/pyCQA/flake8 - rev: 7.1.2 + rev: 7.3.0 hooks: - id: flake8 args: [--verbose, --config, .flake8] additional_dependencies: [flake8-docstrings] - repo: https://github.com/hadolint/hadolint - rev: v2.13.1-beta + rev: v2.14.0 hooks: - id: hadolint-docker name: Lint Dockerfiles diff --git a/cohort_creator/main.py b/cohort_creator/main.py index 21a7f48..f3012b4 100644 --- a/cohort_creator/main.py +++ b/cohort_creator/main.py @@ -551,12 +551,10 @@ def _generate_bagel_for_cohort( df.to_csv(output_dir / "bagel.csv", index=False) cc_log.info(f"Cohort created at {output_dir}") - cc_log.info( - f"""Check what subjects have derivatives ready + cc_log.info(f"""Check what subjects have derivatives ready by uploading {output_dir / "bagel.csv"} to https://digest.neurobagel.org/ -""" - ) +""") def _recreate_mriqc_group_reports(