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[pre-commit.ci] pre-commit autoupdate #249

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68f261c
[pre-commit.ci] pre-commit autoupdate
pre-commit-ci[bot] Jan 19, 2026
223e098
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jan 19, 2026
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18 changes: 9 additions & 9 deletions .pre-commit-config.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@

repos:
- repo: https://github.com/pre-commit/pre-commit-hooks
rev: v5.0.0
rev: v6.0.0
hooks:
- id: check-ast
- id: check-case-conflict
Expand All @@ -27,36 +27,36 @@ repos:
args: [--mapping, '4', --sequence, '4', --offset, '0']

- repo: https://github.com/macisamuele/language-formatters-pre-commit-hooks
rev: v2.14.0
rev: v2.16.0
hooks:
- id: pretty-format-toml
args: [--autofix, --indent, '4']

- repo: https://github.com/pycqa/isort
rev: 6.0.1
rev: 7.0.0
hooks:
- id: isort
args: [--profile, black, --settings-path, pyproject.toml]

- repo: https://github.com/ikamensh/flynt/
rev: 1.0.1
rev: 1.0.6
hooks:
- id: flynt

- repo: https://github.com/asottile/pyupgrade
rev: v3.19.1
rev: v3.21.2
hooks:
- id: pyupgrade
args: [--py38-plus]

- repo: https://github.com/psf/black-pre-commit-mirror
rev: 25.1.0
rev: 26.1.0
hooks:
- id: black
args: [--config=pyproject.toml]

- repo: https://github.com/adamchainz/blacken-docs
rev: 1.19.1
rev: 1.20.0
hooks:
- id: blacken-docs
additional_dependencies:
Expand All @@ -77,14 +77,14 @@ repos:
# args: [--config-file=pyproject.toml]

- repo: https://github.com/pyCQA/flake8
rev: 7.1.2
rev: 7.3.0
hooks:
- id: flake8
args: [--verbose, --config, .flake8]
additional_dependencies: [flake8-docstrings]

- repo: https://github.com/hadolint/hadolint
rev: v2.13.1-beta
rev: v2.14.0
hooks:
- id: hadolint-docker
name: Lint Dockerfiles
Expand Down
6 changes: 2 additions & 4 deletions cohort_creator/main.py
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Expand Up @@ -551,12 +551,10 @@ def _generate_bagel_for_cohort(
df.to_csv(output_dir / "bagel.csv", index=False)

cc_log.info(f"Cohort created at {output_dir}")
cc_log.info(
f"""Check what subjects have derivatives ready
cc_log.info(f"""Check what subjects have derivatives ready
by uploading {output_dir / "bagel.csv"} to
https://digest.neurobagel.org/
"""
)
""")


def _recreate_mriqc_group_reports(
Expand Down
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