Skip to content

Commit

Permalink
updated spice_scan_to_nxdict function to read in instrument json and …
Browse files Browse the repository at this point in the history 
…save parameters in nexus files
  • Loading branch information
Bing Li committed Nov 12, 2024
1 parent c605478 commit d5f8bc2
Show file tree
Hide file tree
Showing 189 changed files with 2,210 additions and 50 deletions.
Binary file modified .DS_Store
View file
Binary file not shown.
Binary file added scripts/.DS_Store
View file
Binary file not shown.
Binary file added scripts/IPTS32816_HB1A_exp1034/.DS_Store
View file
Binary file not shown.
38 changes: 38 additions & 0 deletions scripts/IPTS32816_HB1A_exp1034/FeSn_film_HB1A.py
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,38 @@
import matplotlib.pyplot as plt

from tavi.data.scan import Scan
from tavi.instrument.resolution.cooper_nathans import CN
from tavi.plotter import Plot1D
from tavi.sample.xtal import Xtal

instrument_config_json_path = "./scripts/IPTS32816_HB1A_exp1034/hb1a.json"
tas = CN(SPICE_CONVENTION=True)
tas.load_instrument_params_from_json(instrument_config_json_path)

sample_json_path = "./scripts/IPTS32816_HB1A_exp1034/fesn.json"
sample = Xtal.from_json(sample_json_path)
tas.mount_sample(sample)

ei = 14.4503
ef = 14.4503
hkl = (0, 0, 0)
R0 = False


path_to_spice_folder = "./scripts/IPTS32816_HB1A_exp1034/exp1034/"
scan35 = Scan.from_spice(path_to_spice_folder, scan_num=35)
fesn000p5_lscan = scan35.get_data(norm_to=(120, "mcu"))

p2 = Plot1D()
p2.add_scan(fesn000p5_lscan, fmt="o")
fig, ax = plt.subplots()
p2.plot(ax)

scan60 = Scan.from_spice(path_to_spice_folder, scan_num=50)
substrate006_lscan = scan60.get_data(norm_to=(1, "mcu"))

p1 = Plot1D()
p1.add_scan(substrate006_lscan, fmt="o")
fig, ax = plt.subplots()
p1.plot(ax)
plt.show()
Binary file added scripts/IPTS32816_HB1A_exp1034/exp1034/.DS_Store
View file
Binary file not shown.
Binary file added scripts/IPTS32816_HB1A_exp1034/exp1034/Datafiles/.DS_Store
View file
Binary file not shown.
115 changes: 115 additions & 0 deletions scripts/IPTS32816_HB1A_exp1034/exp1034/Datafiles/HB1A_exp1034_scan0035.dat
View file

Large diffs are not rendered by default.

235 changes: 235 additions & 0 deletions scripts/IPTS32816_HB1A_exp1034/exp1034/Datafiles/HB1A_exp1034_scan0050.dat
View file

Large diffs are not rendered by default.

20 changes: 20 additions & 0 deletions scripts/IPTS32816_HB1A_exp1034/exp1034/UBConf/UB10Sep2024_10048PM.ini
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,20 @@
[UBMode]
Mode=1

[Data]
ScatteringPlaneVectors="1.000000,1.000000,0.000000,0.000000,0.000000,1.000000"
Peak1="0.000000,0.000000,6.000000,-66.618652,-33.486055,2.498500,0.000500,14.450292,14.466363"
LatticeParams="4.760000,4.760000,12.990667,90.000000,90.000000,120.000000"
Energy=14.450292

[Matrices]
UBMatrix="-0.004551,0.006024,0.076905,-0.210082,-0.210084,0.000270,0.121211,-0.121143,0.003356"
UBInverse="-0.171364,-2.379949,4.118747,0.188043,-2.380021,-4.117977,12.978238,0.045568,0.566301"
BMatrix="0.242584,0.121292,-0.000000,0.000000,0.210084,-0.000000,0.000000,0.000000,0.076978"

[AngleMode]
Mode=0
PlaneNormal="-0.043593,0.000009,0.999049"
InPlaneRef="-0.000000,-1.000000,0.000009"
UpperArc=0.000500
LowerArc=2.498500
20 changes: 20 additions & 0 deletions scripts/IPTS32816_HB1A_exp1034/exp1034/UBConf/UB10Sep2024_103709AM.ini
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,20 @@
[UBMode]
Mode=1

[Data]
ScatteringPlaneVectors="1.000000,1.000000,0.000000,0.000000,0.000000,1.000000"
Peak1="1.000000,1.000000,0.000000,-59.980586,-29.990293,0.000000,0.000000,14.450292,14.450292"
LatticeParams="4.760000,4.760000,12.990000,90.000000,90.000000,120.000000"
Energy=14.450292

[Matrices]
UBMatrix="0.210084,0.210084,-0.000000,-0.000000,-0.000000,0.076982,0.121292,-0.121292,0.000000"
UBInverse="2.380000,0.000000,4.122281,2.380000,0.000000,-4.122281,0.000000,12.990000,0.000000"
BMatrix="0.242584,0.121292,-0.000000,0.000000,0.210084,-0.000000,0.000000,0.000000,0.076982"

[AngleMode]
Mode=0
PlaneNormal="0.000000,0.000000,1.000000"
InPlaneRef="-0.000000,-1.000000,0.000000"
UpperArc=0.000000
LowerArc=0.000000
20 changes: 20 additions & 0 deletions scripts/IPTS32816_HB1A_exp1034/exp1034/UBConf/UB10Sep2024_10515PM.ini
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,20 @@
[UBMode]
Mode=1

[Data]
ScatteringPlaneVectors="1.000000,1.000000,0.000000,0.000000,0.000000,1.000000"
Peak1="0.000000,0.000000,6.000000,-66.618652,-33.486055,2.498500,0.000500,14.450292,14.466363"
LatticeParams="4.755618,4.755618,12.990667,90.000000,90.000000,120.000000"
Energy=14.450292

[Matrices]
UBMatrix="-0.004556,0.006029,0.076905,-0.210275,-0.210277,0.000270,0.121322,-0.121254,0.003356"
UBInverse="-0.171206,-2.377758,4.114955,0.187870,-2.377830,-4.114187,12.978238,0.045568,0.566301"
BMatrix="0.242808,0.121404,-0.000000,0.000000,0.210278,-0.000000,0.000000,0.000000,0.076978"

[AngleMode]
Mode=0
PlaneNormal="-0.043593,0.000009,0.999049"
InPlaneRef="-0.000000,-1.000000,0.000009"
UpperArc=0.000500
LowerArc=2.498500
20 changes: 20 additions & 0 deletions scripts/IPTS32816_HB1A_exp1034/exp1034/UBConf/UB10Sep2024_10741PM.ini
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,20 @@
[UBMode]
Mode=2

[Data]
Peak1="0.000000,0.000000,6.000000,-66.618652,-33.486055,2.498500,0.498000,14.450292,14.466363"
Peak2="1.000000,1.000000,0.000000,-60.004759,59.941035,2.498500,0.498500,14.450292,14.449953"
LatticeParams="4.755618,4.755618,12.990667,90.000000,90.000000,120.000000"
Energy=14.450292

[Matrices]
UBMatrix="-0.004556,0.006029,0.076905,-0.209213,-0.211323,0.000299,0.123145,-0.119422,0.003353"
UBInverse="-0.171207,-2.341903,4.135466,0.187869,-2.413499,-4.093364,12.978238,0.050484,0.565884"
BMatrix="0.242808,0.121404,-0.000000,0.000000,0.210278,-0.000000,0.000000,0.000000,0.076978"

[AngleMode]
Mode=0
PlaneNormal="-0.043593,0.008692,0.999008"
InPlaneRef="0.999043,0.003886,0.043561"
UpperArc=0.498500
LowerArc=2.498502
20 changes: 20 additions & 0 deletions scripts/IPTS32816_HB1A_exp1034/exp1034/UBConf/UB10Sep2024_11106PM.ini
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,20 @@
[UBMode]
Mode=2

[Data]
Peak1="0.000000,0.000000,6.000000,-66.618652,-33.467100,2.498500,0.498000,14.450292,14.466363"
Peak2="1.000000,1.000000,0.000000,-60.004759,59.941035,2.498500,0.498500,14.450292,14.449953"
LatticeParams="4.755618,4.755618,12.990667,90.000000,90.000000,120.000000"
Energy=14.450292

[Matrices]
UBMatrix="-0.004625,0.005960,0.076905,-0.209213,-0.211324,0.000274,0.123142,-0.119425,0.003353"
UBInverse="-0.171993,-2.341906,4.135432,0.187083,-2.413502,-4.093398,12.978252,0.046186,0.565922"
BMatrix="0.242808,0.121404,-0.000000,0.000000,0.210278,-0.000000,0.000000,0.000000,0.076978"

[AngleMode]
Mode=0
PlaneNormal="-0.043593,0.008692,0.999009"
InPlaneRef="0.999044,0.003555,0.043564"
UpperArc=0.498500
LowerArc=2.498502
20 changes: 20 additions & 0 deletions scripts/IPTS32816_HB1A_exp1034/exp1034/UBConf/UB10Sep2024_11642PM.ini
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,20 @@
[UBMode]
Mode=2

[Data]
Peak1="0.000000,0.000000,6.000000,-66.618652,-33.467100,2.498500,0.498000,14.450292,14.466363"
Peak2="1.000000,1.000000,0.000000,-60.004759,59.941035,2.498500,0.498500,14.450292,14.449953"
LatticeParams="4.765809,4.765809,12.990667,90.000000,90.000000,120.000000"
Energy=14.450292

[Matrices]
UBMatrix="-0.004615,0.005947,0.076905,-0.208766,-0.210872,0.000274,0.122879,-0.119170,0.003353"
UBInverse="-0.172362,-2.346924,4.144294,0.187484,-2.418674,-4.102170,12.978252,0.046186,0.565922"
BMatrix="0.242288,0.121144,-0.000000,0.000000,0.209828,-0.000000,0.000000,0.000000,0.076978"

[AngleMode]
Mode=0
PlaneNormal="-0.043593,0.008692,0.999009"
InPlaneRef="0.999044,0.003555,0.043564"
UpperArc=0.498500
LowerArc=2.498502
20 changes: 20 additions & 0 deletions scripts/IPTS32816_HB1A_exp1034/exp1034/UBConf/UB10Sep2024_11723PM.ini
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,20 @@
[UBMode]
Mode=2

[Data]
Peak1="0.000000,0.000000,6.000000,-66.618652,-33.467100,2.498500,0.498000,14.450292,14.466363"
Peak2="1.000000,1.000000,0.000000,-59.924000,59.938145,2.498500,0.498500,14.450292,14.449996"
LatticeParams="4.765809,4.765809,12.990667,90.000000,90.000000,120.000000"
Energy=14.450292

[Matrices]
UBMatrix="-0.004615,0.005947,0.076905,-0.208766,-0.210872,0.000274,0.122879,-0.119170,0.003353"
UBInverse="-0.172362,-2.346924,4.144294,0.187484,-2.418674,-4.102170,12.978252,0.046186,0.565922"
BMatrix="0.242288,0.121144,-0.000000,0.000000,0.209828,-0.000000,0.000000,0.000000,0.076978"

[AngleMode]
Mode=0
PlaneNormal="-0.043593,0.008692,0.999011"
InPlaneRef="0.999044,0.003555,0.043564"
UpperArc=0.498500
LowerArc=2.498502
20 changes: 20 additions & 0 deletions scripts/IPTS32816_HB1A_exp1034/exp1034/UBConf/UB10Sep2024_11929PM.ini
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,20 @@
[UBMode]
Mode=2

[Data]
Peak1="0.000000,0.000000,6.000000,-66.618652,-33.467100,2.498500,0.498000,14.450292,14.466363"
Peak2="1.000000,1.000000,0.000000,-59.924000,59.938145,2.498500,0.498500,14.450292,14.449996"
LatticeParams="4.764077,4.764077,12.990667,90.000000,90.000000,120.000000"
Energy=14.450292

[Matrices]
UBMatrix="-0.004617,0.005949,0.076905,-0.208842,-0.210948,0.000274,0.122924,-0.119213,0.003353"
UBInverse="-0.172299,-2.346072,4.142788,0.187416,-2.417795,-4.100679,12.978252,0.046186,0.565922"
BMatrix="0.242377,0.121188,-0.000000,0.000000,0.209904,-0.000000,0.000000,0.000000,0.076978"

[AngleMode]
Mode=0
PlaneNormal="-0.043593,0.008692,0.999011"
InPlaneRef="0.999044,0.003555,0.043564"
UpperArc=0.498500
LowerArc=2.498502
20 changes: 20 additions & 0 deletions scripts/IPTS32816_HB1A_exp1034/exp1034/UBConf/UB10Sep2024_11940PM.ini
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,20 @@
[UBMode]
Mode=2

[Data]
Peak1="0.000000,0.000000,6.000000,-66.618652,-33.467100,2.498500,0.498000,14.450292,14.466363"
Peak2="1.000000,1.000000,0.000000,-59.924000,59.938145,2.498500,0.498500,14.450292,14.449996"
LatticeParams="4.764077,4.764077,12.990667,90.000000,90.000000,120.000000"
Energy=14.450292

[Matrices]
UBMatrix="-0.004617,0.005949,0.076905,-0.208842,-0.210948,0.000274,0.122924,-0.119213,0.003353"
UBInverse="-0.172299,-2.346072,4.142788,0.187416,-2.417795,-4.100679,12.978252,0.046186,0.565922"
BMatrix="0.242377,0.121188,-0.000000,0.000000,0.209904,-0.000000,0.000000,0.000000,0.076978"

[AngleMode]
Mode=0
PlaneNormal="-0.043593,0.008692,0.999011"
InPlaneRef="0.999044,0.003555,0.043564"
UpperArc=0.498500
LowerArc=2.498502
20 changes: 20 additions & 0 deletions scripts/IPTS32816_HB1A_exp1034/exp1034/UBConf/UB10Sep2024_11943PM.ini
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,20 @@
[UBMode]
Mode=2

[Data]
Peak1="0.000000,0.000000,6.000000,-66.618652,-33.467100,2.498500,0.498000,14.450292,14.466363"
Peak2="1.000000,1.000000,0.000000,-59.924000,59.938145,2.498500,0.498500,14.450292,14.449996"
LatticeParams="4.764077,4.764077,12.990667,90.000000,90.000000,120.000000"
Energy=14.450292

[Matrices]
UBMatrix="-0.004617,0.005949,0.076905,-0.208842,-0.210948,0.000274,0.122924,-0.119213,0.003353"
UBInverse="-0.172299,-2.346072,4.142788,0.187416,-2.417795,-4.100679,12.978252,0.046186,0.565922"
BMatrix="0.242377,0.121188,-0.000000,0.000000,0.209904,-0.000000,0.000000,0.000000,0.076978"

[AngleMode]
Mode=0
PlaneNormal="-0.043593,0.008692,0.999011"
InPlaneRef="0.999044,0.003555,0.043564"
UpperArc=0.498500
LowerArc=2.498502
20 changes: 20 additions & 0 deletions scripts/IPTS32816_HB1A_exp1034/exp1034/UBConf/UB10Sep2024_12006PM.ini
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,20 @@
[UBMode]
Mode=2

[Data]
Peak1="0.000000,0.000000,6.000000,-66.618652,-33.467100,2.498500,0.498000,14.450292,14.466363"
Peak2="1.000000,1.000000,0.000000,-59.924000,59.938145,2.498500,0.498500,14.450292,14.449996"
LatticeParams="4.767975,4.767975,12.990667,90.000000,90.000000,120.000000"
Energy=14.450292

[Matrices]
UBMatrix="-0.004613,0.005944,0.076905,-0.208671,-0.210776,0.000274,0.122823,-0.119116,0.003353"
UBInverse="-0.172440,-2.347991,4.146177,0.187570,-2.419774,-4.104034,12.978252,0.046186,0.565922"
BMatrix="0.242178,0.121089,-0.000000,0.000000,0.209733,-0.000000,0.000000,0.000000,0.076978"

[AngleMode]
Mode=0
PlaneNormal="-0.043593,0.008692,0.999011"
InPlaneRef="0.999044,0.003555,0.043564"
UpperArc=0.498500
LowerArc=2.498502
20 changes: 20 additions & 0 deletions scripts/IPTS32816_HB1A_exp1034/exp1034/UBConf/UB10Sep2024_12014PM.ini
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,20 @@
[UBMode]
Mode=2

[Data]
Peak1="0.000000,0.000000,6.000000,-66.618652,-33.467100,2.498500,0.498000,14.450292,14.466363"
Peak2="1.000000,1.000000,0.000000,-59.870000,59.938145,2.498500,0.498500,14.450292,14.449996"
LatticeParams="4.767975,4.767975,12.990667,90.000000,90.000000,120.000000"
Energy=14.450292

[Matrices]
UBMatrix="-0.004613,0.005944,0.076905,-0.208671,-0.210776,0.000274,0.122823,-0.119116,0.003353"
UBInverse="-0.172440,-2.347991,4.146177,0.187570,-2.419774,-4.104034,12.978252,0.046186,0.565922"
BMatrix="0.242178,0.121089,-0.000000,0.000000,0.209733,-0.000000,0.000000,0.000000,0.076978"

[AngleMode]
Mode=0
PlaneNormal="-0.043593,0.008692,0.999011"
InPlaneRef="0.999044,0.003555,0.043564"
UpperArc=0.498500
LowerArc=2.498502
20 changes: 20 additions & 0 deletions scripts/IPTS32816_HB1A_exp1034/exp1034/UBConf/UB10Sep2024_12201PM.ini
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,20 @@
[UBMode]
Mode=2

[Data]
Peak1="0.000000,0.000000,6.000000,-66.618652,-33.467100,2.498500,0.498000,14.450292,14.466363"
Peak2="1.000000,1.000000,0.000000,-59.870000,59.938145,2.498500,0.498500,14.450292,14.449996"
LatticeParams="4.769421,4.769421,12.990667,90.000000,90.000000,120.000000"
Energy=14.450292

[Matrices]
UBMatrix="-0.004612,0.005942,0.076905,-0.208608,-0.210712,0.000274,0.122786,-0.119080,0.003353"
UBInverse="-0.172492,-2.348703,4.147435,0.187626,-2.420507,-4.105279,12.978252,0.046186,0.565922"
BMatrix="0.242105,0.121052,-0.000000,0.000000,0.209669,-0.000000,0.000000,0.000000,0.076978"

[AngleMode]
Mode=0
PlaneNormal="-0.043593,0.008692,0.999011"
InPlaneRef="0.999044,0.003555,0.043564"
UpperArc=0.498500
LowerArc=2.498502
20 changes: 20 additions & 0 deletions scripts/IPTS32816_HB1A_exp1034/exp1034/UBConf/UB10Sep2024_12211PM.ini
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,20 @@
[UBMode]
Mode=2

[Data]
Peak1="0.000000,0.000000,6.000000,-66.618652,-33.467100,2.498500,0.498000,14.450292,14.466363"
Peak2="1.000000,1.000000,0.000000,-59.850000,59.938145,2.498500,0.498500,14.450292,14.449996"
LatticeParams="4.769421,4.769421,12.990667,90.000000,90.000000,120.000000"
Energy=14.450292

[Matrices]
UBMatrix="-0.004612,0.005942,0.076905,-0.208608,-0.210712,0.000274,0.122786,-0.119080,0.003353"
UBInverse="-0.172492,-2.348703,4.147435,0.187626,-2.420507,-4.105279,12.978252,0.046186,0.565922"
BMatrix="0.242105,0.121052,-0.000000,0.000000,0.209669,-0.000000,0.000000,0.000000,0.076978"

[AngleMode]
Mode=0
PlaneNormal="-0.043593,0.008692,0.999011"
InPlaneRef="0.999044,0.003555,0.043564"
UpperArc=0.498500
LowerArc=2.498502
20 changes: 20 additions & 0 deletions scripts/IPTS32816_HB1A_exp1034/exp1034/UBConf/UB10Sep2024_12231PM.ini
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,20 @@
[UBMode]
Mode=2

[Data]
Peak1="0.000000,0.000000,6.000000,-66.618652,-33.467100,2.498500,0.498000,14.450292,14.466363"
Peak2="1.000000,1.000000,0.000000,-59.850000,59.938145,2.498500,0.498500,14.450292,14.449996"
LatticeParams="4.773040,4.773040,12.990667,90.000000,90.000000,120.000000"
Energy=14.450292

[Matrices]
UBMatrix="-0.004608,0.005938,0.076905,-0.208449,-0.210552,0.000274,0.122693,-0.118989,0.003353"
UBInverse="-0.172623,-2.350485,4.150582,0.187769,-2.422344,-4.108394,12.978252,0.046186,0.565922"
BMatrix="0.241921,0.120961,-0.000000,0.000000,0.209510,-0.000000,0.000000,0.000000,0.076978"

[AngleMode]
Mode=0
PlaneNormal="-0.043593,0.008692,0.999011"
InPlaneRef="0.999044,0.003555,0.043564"
UpperArc=0.498500
LowerArc=2.498502
20 changes: 20 additions & 0 deletions scripts/IPTS32816_HB1A_exp1034/exp1034/UBConf/UB10Sep2024_12242PM.ini
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,20 @@
[UBMode]
Mode=2

[Data]
Peak1="0.000000,0.000000,6.000000,-66.618652,-33.467100,2.498500,0.498000,14.450292,14.466363"
Peak2="1.000000,1.000000,0.000000,-59.800000,59.938145,2.498500,0.498500,14.450292,14.449996"
LatticeParams="4.773040,4.773040,12.990667,90.000000,90.000000,120.000000"
Energy=14.450292

[Matrices]
UBMatrix="-0.004608,0.005938,0.076905,-0.208449,-0.210552,0.000274,0.122693,-0.118989,0.003353"
UBInverse="-0.172623,-2.350485,4.150582,0.187769,-2.422344,-4.108394,12.978252,0.046186,0.565922"
BMatrix="0.241921,0.120961,-0.000000,0.000000,0.209510,-0.000000,0.000000,0.000000,0.076978"

[AngleMode]
Mode=0
PlaneNormal="-0.043593,0.008692,0.999011"
InPlaneRef="0.999044,0.003555,0.043564"
UpperArc=0.498500
LowerArc=2.498502
Loading

0 comments on commit d5f8bc2

Please sign in to comment.