Issues

• Officially allow merging of plugin blocks in configuration

  lang/configplugins
  nextflow-io/nextflow#7724 · Filter by author nvnieuwk opened on Sep 30, 2026
  2

• Typed join for records: undocumented field precedence and no failOnMismatch / failOnDuplicate

  lang/dataflow
  nextflow-io/nextflow#7719 · Filter by author pinin4fjords opened on Sep 30, 2026
  2

• Google Batch: INTERNAL errors from the Batch API are not retried and abort the run

  nextflow-io/nextflow#7687 · Filter by author JohnWalshTempus opened on Sep 24, 2026
  1

• Publishing a non-work-directory file with >> in a dynamic path closure throws NPE in PublishOp.getTaskDir

  triage/investigate
  nextflow-io/nextflow#7667 · Filter by author pinin4fjords opened on Sep 23, 2026

• Consistent hangs on "Waiting for file transfers to complete (1 files)" on CephFS/K8S

  executor/k8s
  nextflow-io/nextflow#7666 · Filter by author BioWilko opened on Sep 23, 2026

• TaskHasher folds the evaluated task.ext.* value, putting task.cpus back in the task hash

  nextflow-io/nextflow#7663 · Filter by author jorgee opened on Sep 22, 2026
  2

• Wave container-config env puts operational Fusion settings in the task hash

  software/wavestorage/fusion
  nextflow-io/nextflow#7662 · Filter by author jorgee opened on Sep 22, 2026

• Local executors / container engines behave differently

  nextflow-io/nextflow#7657 · Filter by author JosuaCarl opened on Sep 22, 2026

• nextflow config mixes configs & executes plugins

  lang/configtriage/investigate
  nextflow-io/nextflow#7651 · Filter by author JosuaCarl opened on Sep 21, 2026
  6

• nf-tower: interactive auth prompts hang or fail when stdin is not a terminal

  nextflow-io/nextflow#7642 · Filter by author pditommaso opened on Sep 18, 2026

• nextflow 26.04.x+ incompatible with LSF 10.1.0, Stopping a head job fails to stop compute jobs.

  executor/lsftriage/investigate
  nextflow-io/nextflow#7640 · Filter by author Rabbi-Genomics opened on Sep 18, 2026
  1

• Globstar output patterns may result in invalid move operations when scratch = true and stageOutMode = move

  triage/investigate
  nextflow-io/nextflow#7637 · Filter by author dodslaser opened on Sep 18, 2026

• Google Batch: share a single getTaskStatus lookup in getTraceRecord()

  nextflow-io/nextflow#7636 · Filter by author pditommaso opened on Sep 17, 2026

• Google Batch: Fusion scratch mount omitted for machines with built-in Local SSDs (-lssd)

  nextflow-io/nextflow#7627 · Filter by author adamhowardprice opened on Sep 15, 2026

• Basic architecture awareness when using singularity/apptainer - container image name

  nextflow-io/nextflow#7617 · Filter by author pontus opened on Sep 13, 2026

• Basic architecture awareness when using singularity/apptainer - pulling

  nextflow-io/nextflow#7616 · Filter by author pontus opened on Sep 13, 2026
  1

• Local executor: IllegalThreadStateException in LocalTaskHandler.checkIfCompleted hard-aborts the whole session instead of just the affected task

  triage/investigate
  nextflow-io/nextflow#7569 · Filter by author erikrikarddaniel opened on Sep 1, 2026

• Workflow outputs don't work as expected with an early teturn

  triage/investigate
  nextflow-io/nextflow#7537 · Filter by author znorgaard opened on Aug 24, 2026
  1

• PBSPro executor spamming PBS server with requests

  executor/pbsexecutor/pbspro
  nextflow-io/nextflow#7535 · Filter by author a-chr1s opened on Aug 24, 2026

• splitCsv / CsvParser does not support RFC 4180 escaped quotes

  nextflow-io/nextflow#7529 · Filter by author AdvaitS opened on Aug 22, 2026

• AWS Batch: expose the job-termination rate limit as real config instead of reusing executor.submitRateLimit (and an internal pool name)

  executor/aws-batch
  nextflow-io/nextflow#7502 · Filter by author robsyme opened on Aug 18, 2026
  1

• nf-azure: support Microsoft Fabric OneLake as object storage

  storage/azure
  nextflow-io/nextflow#7495 · Filter by author adamrtalbot opened on Aug 17, 2026

• Output globs descend into hidden directories, collecting Fusion's internal .fusion/ metadata as task outputs

  nextflow-io/nextflow#7480 · Filter by author robsyme opened on Aug 14, 2026
  2

• Add configurable retry with cooldown for failed URL file staging

  nextflow-io/nextflow#7475 · Filter by author MikeWLloyd opened on Aug 13, 2026

• Add a rename method for records

  nextflow-io/nextflow#7473 · Filter by author OlivierCoen opened on Aug 12, 2026
  1