From a876ca1065de0c97cc759fbc2c5a45ab07d0462f Mon Sep 17 00:00:00 2001 From: JoseEspinosa Date: Mon, 1 Jul 2024 15:57:59 +0200 Subject: [PATCH] Fix save_unaligned parameter description in schema --- CHANGELOG.md | 2 ++ nextflow_schema.json | 2 +- 2 files changed, 3 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 0e5b14c6..7513ed77 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -10,6 +10,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - [[#327](https://github.com/nf-core/atacseq/issues/327)] - Consistently support `.csi` indices as alternative to `.bai` to allow SAMTOOLS_INDEX to be used with the `-c` flag. - [[#356](https://github.com/nf-core/atacseq/issues/356)] - Get rid of the `lib` folder and rearrange the pipeline accordingly. - Updated pipeline template to [nf-core/tools 2.13.1](https://github.com/nf-core/tools/releases/tag/2.13.1) +- Updated pipeline template to [nf-core/tools 2.14.1](https://github.com/nf-core/tools/releases/tag/2.14.1) +- [[#359](https://github.com/nf-core/atacseq/issues/359)] - Fix `--save_unaligned` description in schema. ## [[2.1.2](https://github.com/nf-core/atacseq/releases/tag/2.1.2)] - 2022-08-07 diff --git a/nextflow_schema.json b/nextflow_schema.json index 8f4728a5..dd8b587b 100644 --- a/nextflow_schema.json +++ b/nextflow_schema.json @@ -306,7 +306,7 @@ "save_unaligned": { "type": "boolean", "fa_icon": "fas fa-save", - "description": "Where possible, save unaligned reads from either STAR, HISAT2 or Salmon to the results directory.", + "description": "Save unaligned sequences to the output directory (only available for Bowtie 2 And STAR", "help_text": "This may either be in the form of FastQ or BAM files depending on the options available for that particular tool." }, "bamtools_filter_pe_config": {