Fix the rest of the snaps

Author: pinin4fjords

tests/bowtie2.nf.test.snap

@@ -94,7 +94,7 @@
                     "python": "3.8.3"
                 },
                 "SAMTOOLS_FLAGSTAT": {
-                    "samtools": 1.2
+                    "samtools": "1.22.1"
                 },
                 "SAMTOOLS_IDXSTATS": {
                     "samtools": 1.2
@@ -927,7 +927,7 @@
                 "multiqc_samtools_stats.yaml:md5,c1f753728b7d0d969f1de706989508ea",
                 "multiqc_samtools_stats_1.yaml:md5,ac39dbae7578b4fc13bf2753d9f2d2eb",
                 "multiqc_samtools_stats_2.yaml:md5,1bb38f88e3cf993ffd1c1eca67965f48",
-                "multiqc_software_versions.yaml:md5,a5ecffe0b008ff305869c19dfc011d9b",
+                "multiqc_software_versions.yaml:md5,859734ef8a00c5e3e80d49a8a2a05200",
                 "multiqc_strand_shift_correlation.yaml:md5,87ce7906a3297afe5f5d73fe6e6d86ca",
                 "picard-1_alignment_readlength_plot.yaml:md5,ef8322029669a340b33c3efe78c5df94",
                 "picard-1_alignment_summary_Aligned_Bases.yaml:md5,0f3082cdd9d84f49658e02ab83ecd123",
@@ -970,9 +970,9 @@
         ],
         "meta": {
             "nf-test": "0.9.2",
-            "nextflow": "25.04.6"
+            "nextflow": "25.04.3"
         },
-        "timestamp": "2025-09-05T09:10:46.508532"
+        "timestamp": "2025-09-17T13:11:14.489285555"
     },
     "bowtie2 with stub": {
         "content": [

tests/chromap.nf.test.snap

@@ -93,7 +93,7 @@
                     "python": "3.8.3"
                 },
                 "SAMTOOLS_FLAGSTAT": {
-                    "samtools": 1.2
+                    "samtools": "1.22.1"
                 },
                 "SAMTOOLS_IDXSTATS": {
                     "samtools": 1.2
@@ -930,7 +930,7 @@
                 "multiqc_samtools_stats.yaml:md5,9d9b24aceea1c649a84fa5bcb35fa6c6",
                 "multiqc_samtools_stats_1.yaml:md5,0e4875a9c9c2bfd78588a3ce04ef5caf",
                 "multiqc_samtools_stats_2.yaml:md5,383b58724b6e90ca35f568ebf6ee8919",
-                "multiqc_software_versions.yaml:md5,27f049009a47fb61615d339fca548943",
+                "multiqc_software_versions.yaml:md5,8401e60f607b4c9b945aea949fd0f01e",
                 "multiqc_strand_shift_correlation.yaml:md5,14fa8c729c885eea869abeb465ddc31c",
                 "picard-1_alignment_readlength_plot.yaml:md5,1f645e3a75839bf834fa250fb0e46d91",
                 "picard-1_alignment_summary_Aligned_Bases.yaml:md5,392fec9f38be3feea5b930209544b972",
@@ -973,9 +973,9 @@
         ],
         "meta": {
             "nf-test": "0.9.2",
-            "nextflow": "25.04.6"
+            "nextflow": "25.04.3"
         },
-        "timestamp": "2025-09-05T09:23:12.357839"
+        "timestamp": "2025-09-17T13:22:19.456795982"
     },
     "chromap with stub": {
         "content": [

tests/skip_trimming.nf.test.snap

@@ -93,7 +93,7 @@
                     "python": "3.8.3"
                 },
                 "SAMTOOLS_FLAGSTAT": {
-                    "samtools": 1.2
+                    "samtools": "1.22.1"
                 },
                 "SAMTOOLS_IDXSTATS": {
                     "samtools": 1.2
@@ -807,7 +807,7 @@
                 "multiqc_samtools_stats.yaml:md5,75a45fdc0dff7bd8e983c26fa1639815",
                 "multiqc_samtools_stats_1.yaml:md5,b1a5b16e9fab0cdb3c81f7ff982e1f23",
                 "multiqc_samtools_stats_2.yaml:md5,0b4e00e27f065e7a056635818735d494",
-                "multiqc_software_versions.yaml:md5,78f1ee9684815c477e1db322f983b475",
+                "multiqc_software_versions.yaml:md5,7a944a9f5e4b1937e872aee1b547caf1",
                 "multiqc_strand_shift_correlation.yaml:md5,d07ccd5f89fe50a98a5e6673c938187c",
                 "picard-1_alignment_readlength_plot.yaml:md5,cd5131a2c38d9dc8072c39ee191d7e0b",
                 "picard-1_alignment_summary_Aligned_Bases.yaml:md5,86717ca1bbeef507046dee670543c763",
@@ -850,9 +850,9 @@
         ],
         "meta": {
             "nf-test": "0.9.2",
-            "nextflow": "25.04.6"
+            "nextflow": "25.04.3"
         },
-        "timestamp": "2025-09-05T10:05:47.259099"
+        "timestamp": "2025-09-17T13:34:31.102064875"
     },
     "skip_trimming with stub": {
         "content": [

tests/star.nf.test.snap

@@ -86,7 +86,7 @@
                     "python": "3.8.3"
                 },
                 "SAMTOOLS_FLAGSTAT": {
-                    "samtools": 1.2
+                    "samtools": "1.22.1"
                 },
                 "SAMTOOLS_IDXSTATS": {
                     "samtools": 1.2
@@ -897,7 +897,7 @@
                 "multiqc_samtools_stats.yaml:md5,e6c2a7caf8babb26af5fee07f7a7090d",
                 "multiqc_samtools_stats_1.yaml:md5,ead1283548e02f0f6dc7fab553959dfb",
                 "multiqc_samtools_stats_2.yaml:md5,abdd0b1a5a908fddb05c6c4a4ad2bd4e",
-                "multiqc_software_versions.yaml:md5,0315bef468d77874912e9365e75e8fa6",
+                "multiqc_software_versions.yaml:md5,fae00ca76d39c7e38c95813ffeb25053",
                 "multiqc_strand_shift_correlation.yaml:md5,b3300505766eb423380ba48bd8161720",
                 "picard-1_alignment_readlength_plot.yaml:md5,9f96961103f78afcc5e42ab1818d1646",
                 "picard-1_alignment_summary_Aligned_Bases.yaml:md5,64a9971ff2cb4560639a455283127f8c",
@@ -1000,9 +1000,9 @@
         ],
         "meta": {
             "nf-test": "0.9.2",
-            "nextflow": "25.04.6"
+            "nextflow": "25.04.3"
         },
-        "timestamp": "2025-09-05T10:23:27.812736"
+        "timestamp": "2025-09-17T13:50:40.996684387"
     },
     "star with stub": {
         "content": [