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To whom it may concern the following is a suggestion that I brought up on the slack and we thought would be worth it to add to the repo.
In the current iteration of the pipeline there does not yet exist a step which merges bam files from different biological replicates (i.e. similar to the nf-core/ATAC pipeline). When converted to a bigwig a merged bam file with increased depth would be a better representation from which to heatmap when plotting consensus peaks in downstream analyses etc.
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Ryan
alexthiery, ftamiro, wge11 and a1ultima
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